View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8761_low_19 (Length: 304)
Name: NF8761_low_19
Description: NF8761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8761_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 46010039 - 46009774
Alignment:
| Q |
1 |
aaacacattaaaaatggaaaacgacatttgttttaaaatatttatttaactcgcaacaaaattaatattcatttttaagcatatgaattatttaatgttt |
100 |
Q |
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| T |
46010039 |
aaacacattaaaaatggaaaacgacatttgttttaaaatatttatttaactcgcaacaaaattaatattcatttttaagcatatgaattattta------ |
46009946 |
T |
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| Q |
101 |
gtttgacttaattaatctaacgcacagtaaaagttttagtcttataaaagtgaaaaataaataaatcactgcagggaaaactaacgannnnnnnacaaag |
200 |
Q |
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| T |
46009945 |
---------------tctaacgcacaataaaagttttagtcttataaaagtgaaaaataaataaatcactgcagggaaaactaacgatttttttacaaag |
46009861 |
T |
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| Q |
201 |
accaatgtctttgacaccaaaccaaactaagcatatggcttaaataatgacacatgtttaattgtatgcacaaacgatttattgatt |
287 |
Q |
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| T |
46009860 |
accaatgtctttgacaccaaaccaaactaagcacatggcttaaataatgacacatgtttaattgtatgcacaaacgatttattgatt |
46009774 |
T |
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