View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8761_low_2 (Length: 636)
Name: NF8761_low_2
Description: NF8761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8761_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 18 - 615
Target Start/End: Original strand, 54910139 - 54910737
Alignment:
| Q |
18 |
catatcccccagccccgaactgtttcagcacagcctaaaccacaacaaaacgtgattgagaagtagagcaagaaatgaattgaatattgtcatcaaaatt |
117 |
Q |
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| T |
54910139 |
catatcccccagccccgaactgtttcagcacagcctaaaccacaacaaaaagtgattgagaagtagagcgagaaatgaattgaatattgtcatcaaaatt |
54910238 |
T |
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| Q |
118 |
gcatctttgtggtaaggttttcttggatgaatctatgcttaggatgctaaagcagcaatgcaattagatggtagcagctcgagattaaactcattattgt |
217 |
Q |
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| T |
54910239 |
gcatctttgtggtaaggttttcttggatgaatctatgcttaggatgctaaagcagcaatgcaattagatggtagcagctcgagattaaactcattattgt |
54910338 |
T |
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| Q |
218 |
tattctctaagatttaagaagtacaaaaatatttgaaacaaggaaataaaaaagcaaacctgttgttggcgagcgacttgttctctgagcttggaggctt |
317 |
Q |
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| T |
54910339 |
tattctctaagatttaagcagtacataaacatttgaaacaaggaaataaaaaagcaaacctgttgttggcgagcgacttgttctctgagcttggaggctt |
54910438 |
T |
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| Q |
318 |
ggtttctgatagcttccattcaagtcaatctatgcgtagaatcgaaagcgaagaagaaacctgttattgaatctcacgcacgcacactttttgatttcag |
417 |
Q |
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| T |
54910439 |
gttttctgatagcttccattcaattcaatctatgcttagaatcgaaagcgaagaagaaacctgttattgaatctcacgcacgcacactttttgatttcag |
54910538 |
T |
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| Q |
418 |
accaaatcnnnnnnnnnnnnnnnngttgaaaaaatactatgctccgtctcttttcatattaccagtttacaaaattcacccattagtaagaatgatt--- |
514 |
Q |
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| T |
54910539 |
accaaatcagagagagagagagagattg--aaaatactatgctccgtctcttttcatattaccagtttacaaaattcacccattagtaagaatgttttta |
54910636 |
T |
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| Q |
515 |
ttttattttaaggggagagtattaagtaaagatctttgaattatctttttaagaaaagatgctaaaagatctttgaattataaatttgtcacaaacgcaa |
614 |
Q |
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| T |
54910637 |
ttttattttaaggggagagtattaagtaaagatctttgaattttctttttaagaaaagatgctaaaagatctttgaattataaatttgtcacaaatgcaa |
54910736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 337
Target Start/End: Original strand, 27044635 - 27044698
Alignment:
| Q |
274 |
aacctgttgttggcgagcgacttgttctctgagcttggaggcttggtttctgatagcttccatt |
337 |
Q |
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| T |
27044635 |
aacctgttgttggcgagcgacttgttctcgaagcttcgaagcttgttttctgatagcgtccatt |
27044698 |
T |
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