View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8761_low_21 (Length: 297)
Name: NF8761_low_21
Description: NF8761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8761_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 282
Target Start/End: Original strand, 24620646 - 24620908
Alignment:
| Q |
20 |
tccttactagtaacttgggatgggaaactgactacgaagtctctatttcaaggcaatcttgatgctcaaatgcgatgaagtaccaatatagacaagacac |
119 |
Q |
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| T |
24620646 |
tccttactagtaacttgtgatgggaaactgactacgaagtctctatttcaaggcaatcttgatgctcaaatgcgatgaagtaccaataaagacaagacat |
24620745 |
T |
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| Q |
120 |
gtgaacactagtaataaaatatgaaaatagaagtaagtgaatgtaattacgtgcgttagtgtcgtatgttggaccttgaatttgatgtgtggggctacat |
219 |
Q |
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| T |
24620746 |
gtgaacactagtaataaaatatgaaaatagaagtaagtgaatgtaattacgtgcgtcagtgtcgtatgttggaccttcaatttgatgtatggggctacat |
24620845 |
T |
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| Q |
220 |
aggtcaaatgtagcatgggttcctcgccagattttaatgaatgaagacctatttaaggttcat |
282 |
Q |
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| T |
24620846 |
aggtcaaatgtagcatgggttcctcgccagatttaaatgaatgaagacctatttaaggttcat |
24620908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 4745673 - 4745607
Alignment:
| Q |
25 |
actagtaacttgggatgggaaactgactacgaagtctctatttcaaggcaatcttgatgctcaaatg |
91 |
Q |
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|||||||||||| |||||||||| |||||||||||| ||||||||||||| ||||| || ||||||| |
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| T |
4745673 |
actagtaacttgtgatgggaaaccgactacgaagtccctatttcaaggcattcttggtggtcaaatg |
4745607 |
T |
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