View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8761_low_22 (Length: 293)
Name: NF8761_low_22
Description: NF8761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8761_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 261
Target Start/End: Original strand, 2491748 - 2491992
Alignment:
| Q |
17 |
agtttccggtggtattttccggcttcatacttgagcacaggtattgcataaataacaatgttgtaaatgtaattaatagtgtagcttgtgttgtactata |
116 |
Q |
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| T |
2491748 |
agtttccggtggtattttccggcttcatacttgagcacaggtattgcataaataacaatgttgtaaatgtaattaatagtgtagcttgtgttgtactata |
2491847 |
T |
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| Q |
117 |
cctattattattacatagtaataagccttttatagaagaaatagcagttcctactatgtaaaaaatatgaaaaataggtctgctattcaatattactggc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2491848 |
cctattattattacatagtaataagccttttatagaagaaatagcagttcctactatgtacaaaatatgaaaaataggtctgctattcaatattactggc |
2491947 |
T |
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| Q |
217 |
ataagctagcaattattcgatattaaagtgttatgggaaaattcc |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2491948 |
ataagctagcaattattcgatattaaagtgttatgggaaaattcc |
2491992 |
T |
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