View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8761_low_23 (Length: 279)
Name: NF8761_low_23
Description: NF8761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8761_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 6e-77; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 12136742 - 12136542
Alignment:
| Q |
1 |
tgcactaagaaccaacaatctgtgggggttgactcaacaatctcaacttctttaacccttagttcaaatcagtgtggtttggtttggtttaacagtttgt |
100 |
Q |
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| T |
12136742 |
tgcactaagaaccaacaatttgtgggggttgactcaacaatctcaacttctttaacccttagctcaaatcagtgtggtttggtttggtttaacagtttgt |
12136643 |
T |
|
| Q |
101 |
ttaacatccccagggtttagtatcaacnnnnnnnnaatggtggtgaatgttagtcattagttgtttgattagtttttactcctttgtccgtctttgaacc |
200 |
Q |
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| T |
12136642 |
ttaacatccccagggtttagtatcaacttttttttaa---tggttaatgttagtaattagttgtttgattagtttttactcctttgtccgactttgaacc |
12136546 |
T |
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| Q |
201 |
cagt |
204 |
Q |
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|||| |
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| T |
12136545 |
cagt |
12136542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 12135858 - 12135811
Alignment:
| Q |
210 |
ttgctatgccagacac--ttcgtcggggttcgaaccccaacccctccg |
255 |
Q |
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| T |
12135858 |
ttgctatgccagacacacttcgtcggggttcgaaccccaacccctccg |
12135811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 16622600 - 16622656
Alignment:
| Q |
146 |
aatgttagtcattagttgtttgattagtttttactcctttgtccgtctttgaacccag |
203 |
Q |
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| T |
16622600 |
aatgttagtaattagttgttagattagttttt-ctcctttatccgagtttgaacccag |
16622656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 36472607 - 36472662
Alignment:
| Q |
147 |
atgttagtcattagttgtttgattagtttttactcctttgtccgtctttgaacccag |
203 |
Q |
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|||||||| |||||||||| ||||||||||| |||||||||||| ||||||||||| |
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| T |
36472607 |
atgttagt-attagttgttagattagtttttcctcctttgtccgggtttgaacccag |
36472662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 6296956 - 6296900
Alignment:
| Q |
146 |
aatgttagtcattagttgtttgattagtttttactcctttgtccgtctttgaacccag |
203 |
Q |
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||||||||| |||||||||| ||||||||||| |||||||||| | ||||||||||| |
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| T |
6296956 |
aatgttagtaattagttgttagattagttttt-ctcctttgtctgggtttgaacccag |
6296900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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