View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8761_low_26 (Length: 245)
Name: NF8761_low_26
Description: NF8761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8761_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 26799138 - 26799373
Alignment:
| Q |
14 |
gacatcaaacacaacacggatactgacacgtcgacacagttaatagtttgnnnnnnntaatataattcaatgtaattactatttataagtgtcggtgtaa |
113 |
Q |
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| T |
26799138 |
gacatcaaacacgacacagatactgatacgtcgacacagttaatagtttaaaaaaaataatataattcaatgtaattactatttacaagtgtcggtgtaa |
26799237 |
T |
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| Q |
114 |
cacgtctaatgctggaaatgtcc-------atagatcagttgttactattactattcattcacatgtgagttttcttgagtctac---atttaccatatg |
203 |
Q |
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| T |
26799238 |
cacacctaatacaagaaatgcccgtgcttcatagatcaattgttactattactattcattcacatgtgagttttcttgagtctacattatttaccatatg |
26799337 |
T |
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| Q |
204 |
tactgccaactaaccatccaaacacagtactgttgt |
239 |
Q |
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| T |
26799338 |
tactgccaaccaaccatccaaaaacagtactgttgt |
26799373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 6e-61; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 10219667 - 10219902
Alignment:
| Q |
14 |
gacatcaaacacaacacggatactgacacgtcgacacagttaatagtttgnnnnnnntaatataattcaatgtaattactatttataagtgtcggtgtaa |
113 |
Q |
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| T |
10219667 |
gacatcaaacacgacacagatactgatacgtcgacacagttaatagtttaaaaaaaataatataattcaatgtaattactatttacaagtgtcggtgtaa |
10219766 |
T |
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| Q |
114 |
cacgtctaatgctggaaatgtcc-------atagatcagttgttactattactattcattcacatgtgagttttcttgagtctac---atttaccatatg |
203 |
Q |
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| T |
10219767 |
cacacctaatacaagaaatgcccgtgcttcatagatcaattgttactattactattcattcacatgtgagttttcttgagtctacattatttaccatatg |
10219866 |
T |
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| Q |
204 |
tactgccaactaaccatccaaacacagtactgttgt |
239 |
Q |
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| T |
10219867 |
tactgccaaccaaccatccaaaaacagtactgttgt |
10219902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 10125543 - 10125631
Alignment:
| Q |
149 |
ttactattactattcattcacatgtgagttttcttgagtc-tacatttaccatatgtactgccaactaaccatccaaacacagtactgttgtc |
240 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| | ||||||||||| |||||||||||||| |
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| T |
10125543 |
ttactattactattcattcacatgtgagttttattgagtcttacctttaccatatgtactg----caaaccatccaaaaacagtactgttgtc |
10125631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 10182888 - 10182976
Alignment:
| Q |
149 |
ttactattactattcattcacatgtgagttttcttgagtc-tacatttaccatatgtactgccaactaaccatccaaacacagtactgttgtc |
240 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| | ||||||||||| |||||||||||||| |
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| T |
10182888 |
ttactattactattcattcacatgtgagttttattgagtcttacctttaccatatgtactg----caaaccatccaaaaacagtactgttgtc |
10182976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 10259337 - 10259425
Alignment:
| Q |
149 |
ttactattactattcattcacatgtgagttttcttgagtc-tacatttaccatatgtactgccaactaaccatccaaacacagtactgttgtc |
240 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||| ||| |||||||||||||||| | ||||||||||| |||||||||||||| |
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| T |
10259337 |
ttactattactactcattcacatgtgagttttattgagtcttacctttaccatatgtactg----caaaccatccaaaaacagtactgttgtc |
10259425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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