View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8761_low_28 (Length: 240)

Name: NF8761_low_28
Description: NF8761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8761_low_28
NF8761_low_28
[»] chr3 (20 HSPs)
chr3 (16-240)||(7324023-7324243)
chr3 (66-240)||(2492339-2492513)
chr3 (20-240)||(2635960-2636177)
chr3 (20-240)||(2476873-2477089)
chr3 (84-236)||(2658802-2658954)
chr3 (105-240)||(2644031-2644168)
chr3 (97-240)||(7333927-7334069)
chr3 (17-230)||(7318506-7318715)
chr3 (25-238)||(754211-754419)
chr3 (84-240)||(7442635-7442789)
chr3 (33-236)||(2631600-2631804)
chr3 (24-240)||(9565430-9565641)
chr3 (156-235)||(2502446-2502525)
chr3 (160-240)||(9561716-9561797)
chr3 (20-187)||(767867-768029)
chr3 (98-221)||(666829-666955)
chr3 (20-64)||(2643960-2644004)
chr3 (26-120)||(9594209-9594298)
chr3 (21-64)||(7423856-7423899)
chr3 (157-237)||(9608057-9608138)
[»] scaffold0097 (1 HSPs)
scaffold0097 (108-202)||(34243-34336)
[»] chr5 (4 HSPs)
chr5 (156-236)||(20301680-20301761)
chr5 (156-236)||(20306093-20306174)
chr5 (156-236)||(20310497-20310578)
chr5 (156-236)||(20293233-20293314)
[»] chr7 (1 HSPs)
chr7 (147-236)||(39299222-39299312)
[»] chr4 (1 HSPs)
chr4 (156-235)||(41456337-41456416)
[»] chr2 (1 HSPs)
chr2 (156-204)||(33020630-33020678)


Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 7324023 - 7324243
Alignment:
Q  16 caatatgtgagagaatcaacaactcaaattaatcaaactgatgaaaatatataaaagtcattttcaaccctatagattccatcaaccattagattaacaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||    
T  7324023 caatatgtgagagaatcaacaactcaaattaatcaaactgatgaaaata----aaagtcattttcaaccctatagattccatcaaccattagattaacaa 7324118  T
Q  116 tgatctaacaagtcaacaaaaatcagagcaggcgtaaatcaaataacacaaacaaaaactaaccatatatatgttgcagttgaatcccaacttaagatga 215  Q
    ||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  7324119 tgatccaacaagtcaacaaaaatcagagcaggcgtaaaacaaacaacacaaacaaaaactaaccatatatatgttgcagttgaatcccagcttaaggtga 7324218  T
Q  216 tatcaaactctcaatgtagacattt 240  Q
    |||||||||||||||||||||||||    
T  7324219 tatcaaactctcaatgtagacattt 7324243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 66 - 240
Target Start/End: Complemental strand, 2492513 - 2492339
Alignment:
Q  66 ataaaagtcattttcaaccctatagattccatcaaccattagattaacaatgatctaacaagtcaacaaaaatcagagcaggcgtaaatcaaataacaca 165  Q
    ||||||||||||||||||| | |||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||| |||||||  ||||||||||    
T  2492513 ataaaagtcattttcaaccatttagattccattaaccattagattaacaatgatccaacaagtcaagaaaaatcagagcatgcgtaaaataaataacaca 2492414  T
Q  166 aacaaaaactaaccatatatatgttgcagttgaatcccaacttaagatgatatcaaactctcaatgtagacattt 240  Q
     ||||||||||||||||||||||  |||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  2492413 cacaaaaactaaccatatatatgccgcagttgaatcccagcttaaggtgatatcaaactctcaatgtagacattt 2492339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 2636177 - 2635960
Alignment:
Q  20 atgtgagagaatcaacaactcaaattaatcaaactgatgaaaatatataaaagtcattttcaaccctatagattccatcaaccattagattaacaatgat 119  Q
    ||||||||||||||||||| |||||||| ||||||  ||||||||   |||||  || ||||| |||||||||||||||||||||| |||||||||||||    
T  2636177 atgtgagagaatcaacaacacaaattaaccaaactactgaaaata---aaaagcaatgttcaa-cctatagattccatcaaccatt-gattaacaatgat 2636083  T
Q  120 ctaacaagtcaacaaaaatcagagcaggcgtaaatc--aaataacacaaacaaaaactaaccatatatatgttgcagttgaatcccaacttaagatgata 217  Q
    ||||||||||| ||| |||||||  |||| |||  |  |||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  2636082 ctaacaagtcaccaagaatcagattaggcataatacataaataacacagacaaaaactaaccatatatatgttgcagatgaatcccaacttaaggtgata 2635983  T
Q  218 tcaaactctcaatgtagacattt 240  Q
    |||||||| ||||||||||||||    
T  2635982 tcaaactcgcaatgtagacattt 2635960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 2477089 - 2476873
Alignment:
Q  20 atgtgagagaatcaacaactcaaattaatcaaactgatgaaaatatataaaagtcattttcaaccctatagattccatcaaccattagattaacaatgat 119  Q
    |||||||||||||||||||||||| ||| ||||||  ||||||||    ||||  || ||||||| |||||||||||||||||||| |||||||||||||    
T  2477089 atgtgagagaatcaacaactcaaactaaccaaactattgaaaata----aaagcaatgttcaacc-tatagattccatcaaccatt-gattaacaatgat 2476996  T
Q  120 ctaacaagtcaacaaaaatcagagcaggcgtaaatcaaataacacaaacaa--aaactaaccatatatatgttgcagttgaatcccaacttaagatgata 217  Q
    | ||||| | | ||| | ||| ||||||| ||||  |||||||||||  ||  ||||||||||||||||||||| |||||||||||| |||||| |||||    
T  2476995 ccaacaaataaccaagactcaaagcaggcataaaataaataacacaacaaagaaaactaaccatatatatgttggagttgaatcccagcttaaggtgata 2476896  T
Q  218 tcaaactctcaatgtagacattt 240  Q
    |||||||||||||||||||||||    
T  2476895 tcaaactctcaatgtagacattt 2476873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 84 - 236
Target Start/End: Original strand, 2658802 - 2658954
Alignment:
Q  84 cctatagattccatcaaccattagattaacaatgatctaacaagtcaacaaaaatcagagcaggcgtaa-atc-aaataacacaaacaaaaactaaccat 181  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||| ||  ||||||||||||||||||||||||||    
T  2658802 cctatagattccatcaaccatta-attaacaatgatctaacaagtcaccaaaa-tcagagcaggcataacatataaataacacaaacaaaaactaaccat 2658899  T
Q  182 atatatgttgcagttgaatcccaacttaagatgatatcaaactctcaatgtagac 236  Q
    ||||||||||||||||||||    |||||| |||||| | |||||||||||||||    
T  2658900 atatatgttgcagttgaatcaatgcttaaggtgatatgagactctcaatgtagac 2658954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 105 - 240
Target Start/End: Original strand, 2644031 - 2644168
Alignment:
Q  105 tagattaacaatgatctaacaagtcaacaaaaatcagagcaggcgtaa-atc-aaataacacaaacaaaaactaaccatatatatgttgcagttgaatcc 202  Q
    |||||||| ||||||||||||||| | ||| ||| ||||||||| ||| ||  |||||||||| ||||||||||||||||||||||||||||||||||||    
T  2644031 tagattaataatgatctaacaagtaatcaagaattagagcaggcataacatataaataacacagacaaaaactaaccatatatatgttgcagttgaatcc 2644130  T
Q  203 caacttaagatgatatcaaactctcaatgtagacattt 240  Q
    || |||||| ||||||||||||||||||||||||||||    
T  2644131 cagcttaaggtgatatcaaactctcaatgtagacattt 2644168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 97 - 240
Target Start/End: Original strand, 7333927 - 7334069
Alignment:
Q  97 tcaaccattagattaacaatgatctaacaagtcaacaaaaatcagagcaggcgtaaatcaaataacacaaacaaaaactaaccatatatatgttgcagtt 196  Q
    ||||||||| ||||||||||||||||||||||||  || ||||| ||||||  ||||  |||||||||||| |||||||||||||||||||||||| |||    
T  7333927 tcaaccatt-gattaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaaataaaaactaaccatatatatgttgccgtt 7334025  T
Q  197 gaatcccaacttaagatgatatcaaactctcaatgtagacattt 240  Q
    |||||||| |||| |  |||||||||||||||||||||||||||    
T  7334026 gaatcccagcttagggcgatatcaaactctcaatgtagacattt 7334069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 7318506 - 7318715
Alignment:
Q  17 aatatgtgagagaatcaacaactcaaattaatcaaactgatgaaaatatataaaagtcattttcaaccctatagattccatcaaccattagattaacaat 116  Q
    |||||||||||||||||||||||||| |||| ||||||  ||||||||   |||||  || ||||| | ||||| | |||| ||||||| |||||| |||    
T  7318506 aatatgtgagagaatcaacaactcaa-ttaaccaaactattgaaaata---aaaagcaatgttcaagc-tatagct-ccattaaccatt-gattaataat 7318598  T
Q  117 gatctaacaagtcaacaaaaatcagagcaggcgtaa-atc-aaataacacaaacaaaa-actaaccatatatatgttgcagttgaatcccaacttaagat 213  Q
    |||||||||||||| ||| ||||||||||||| ||| ||  ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |    
T  7318599 gatctaacaagtcatcaagaatcagagcaggcataacatataaataacacaaacaaaaaactaaccatatatatgttgcagttgaatcccagcttaaggt 7318698  T
Q  214 gatatcaaactctcaat 230  Q
    ||||| |||||||||||    
T  7318699 gatattaaactctcaat 7318715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 238
Target Start/End: Original strand, 754211 - 754419
Alignment:
Q  25 agagaatcaacaactcaaattaatcaaactgatgaaaatatataaaagtcattttcaaccctatagattccatcaaccattagattaacaatgatctaac 124  Q
    ||||||||||||||||||||||| || |||  ||||||||    ||||| || | ||||| |||||||||| ||||||||| ||||| |||||||| |||    
T  754211 agagaatcaacaactcaaattaaccatactattgaaaata----aaagtaatgtccaacc-tatagattccctcaaccatt-gattagcaatgatccaac 754304  T
Q  125 aagtcaacaaaaatcagagcaggcgtaaatcaaataacacaa-acaaaaactaaccatatatatgttgcagttgaatcccaacttaagatgatatcaaac 223  Q
    || ||| ||| ||||| | ||| | ||||  ||||||||||| ||||||||||||||| ||||||||||||||||||||   |||||| |||||||||||    
T  754305 aaatcaccaagaatcaaatcagacataaaataaataacacaatacaaaaactaaccatgtatatgttgcagttgaatccttgcttaaggtgatatcaaac 754404  T
Q  224 tctcaatgtagacat 238  Q
    |||||||||||||||    
T  754405 tctcaatgtagacat 754419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 84 - 240
Target Start/End: Original strand, 7442635 - 7442789
Alignment:
Q  84 cctatagattccatcaaccattagattaacaatgatctaacaagtcaacaaaaatcagagcaggcgtaaatcaaataacacaaacaaaa--actaaccat 181  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||  ||||||||||    | |||||  |||||||||||| ||||  |||||||||    
T  7442635 cctatagattccatcaaccatt-gattaacaatgatccaacaagtcacaaaaaatcagat---gtgtaaaataaataacacaaataaaaaaactaaccat 7442730  T
Q  182 atatatgttgcagttgaatcccaacttaagatgatatcaaactctcaatgtagacattt 240  Q
    ||||||||||| ||||||||||| |||| |  |||||||||||||||||||||||||||    
T  7442731 atatatgttgccgttgaatcccagcttagggcgatatcaaactctcaatgtagacattt 7442789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 33 - 236
Target Start/End: Complemental strand, 2631804 - 2631600
Alignment:
Q  33 aacaactcaaattaatcaaactgatgaaaatatataaaagtcattttcaaccctatagattccatcaaccattagattaacaatgatctaacaagtcaac 132  Q
    ||||||||||||||| ||||||  ||||||||   |||||  |||||||||| || ||||||||||||||||| |||||||||||||| |||||||||      
T  2631804 aacaactcaaattaaccaaactattgaaaata---aaaagcaattttcaacc-tacagattccatcaaccatt-gattaacaatgatccaacaagtcact 2631710  T
Q  133 aaaaatcagagcaggcgtaaatcaaa-----taacacaaaca-aaaactaaccatatatatgttgcagttgaatcccaacttaagatgatatcaaactct 226  Q
    || ||||| ||||| | ||||  |||     ||||| ||||| |||||||||||| |||||||||||||||||||||| |||||| |||||| |||||||    
T  2631709 aagaatcaaagcagacataaaataaaataaataacataaacataaaactaaccatgtatatgttgcagttgaatcccagcttaaggtgatattaaactct 2631610  T
Q  227 caatgtagac 236  Q
    ||||||||||    
T  2631609 caatgtagac 2631600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 240
Target Start/End: Original strand, 9565430 - 9565641
Alignment:
Q  24 gagagaatcaacaactcaaattaatcaaactgatgaaaatatataaaagtcattttcaaccctatagattccatcaaccattagattaacaatgatctaa 123  Q
    |||||||||||||||||||||||| || |||  ||||||||    ||||  || | ||||| |||||||||| ||||||||| ||||| |||||||| ||    
T  9565430 gagagaatcaacaactcaaattaaccatactattgaaaata----aaagcaatgtccaacc-tatagattccctcaaccatt-gattagcaatgatccaa 9565523  T
Q  124 caagtcaacaaaaatcagagcaggcgtaaatcaaataacacaa-acaaaaactaaccatatatatgttgcagttgaatcccaacttaagatgatatcaaa 222  Q
    ||| ||| ||| ||||| | ||| | ||||  ||||||||||  | |||||||||||||||  |||||||| ||||||||   | |||| ||||||||||    
T  9565524 caaatcaccaagaatcaaatcagacataaaataaataacacagtaaaaaaactaaccatatcaatgttgcatttgaatccgtgcctaaggtgatatcaaa 9565623  T
Q  223 ctctcaatgtagacattt 240  Q
    ||||||||||||||||||    
T  9565624 ctctcaatgtagacattt 9565641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 2502525 - 2502446
Alignment:
Q  156 aaataacacaaacaaaaactaaccatatatatgttgcagttgaatcccaacttaagatgatatcaaactctcaatgtaga 235  Q
    |||||||| |||  |||||||||||||||||||||||||||||||||   |||||| |||||||||||||||||||||||    
T  2502525 aaataacagaaattaaaactaaccatatatatgttgcagttgaatccatgcttaaggtgatatcaaactctcaatgtaga 2502446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 160 - 240
Target Start/End: Original strand, 9561716 - 9561797
Alignment:
Q  160 aacacaaacaaaa-actaaccatatatatgttgcagttgaatcccaacttaagatgatatcaaactctcaatgtagacattt 240  Q
    ||||||||||||| |||||||||||||||||||||||||||||    |||||| ||||||||||||||||||||||| ||||    
T  9561716 aacacaaacaaaaaactaaccatatatatgttgcagttgaatcaatgcttaaggtgatatcaaactctcaatgtagaaattt 9561797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 767867 - 768029
Alignment:
Q  20 atgtgagagaatcaacaactcaaattaatcaaactgatgaaaatatataaaagtcattttcaaccctatagattccatcaaccattagattaacaatgat 119  Q
    |||||||||||| ||||||||||||||| ||||||  |||||||   |||||  || | |  | |||||| ||||||||||||||| |||||||||||||    
T  767867 atgtgagagaattaacaactcaaattaaccaaactattgaaaat---taaaa--caatgttgaacctatatattccatcaaccatt-gattaacaatgat 767960  T
Q  120 ctaacaagtcaacaaaaatcagagcaggcgtaaatcaaataacacaaac-aaaaactaaccatatatat 187  Q
    | ||||| ||| ||| ||||| |||||   ||||  |||||||||| || |||||||||||||||||||    
T  767961 ccaacaaatcaccaagaatcaaagcagatataaaataaataacacagacaaaaaactaaccatatatat 768029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 221
Target Start/End: Original strand, 666829 - 666955
Alignment:
Q  98 caaccattagattaacaatgatctaacaagtcaacaaaaatcagagcaggcgtaaatcaaataacacaaacaaaaactaacc----atatatatgttgca 193  Q
    |||||||| |||||||||||||| ||||||||| ||| ||||| || | || ||||  |||| |||||||||||||||||||    || ||||||||| |    
T  666829 caaccatt-gattaacaatgatccaacaagtcaccaagaatcaaaggaagcataaaataaattacacaaacaaaaactaaccatttatttatatgttgta 666927  T
Q  194 gttgaatcccaacttaagatgatatcaa 221  Q
    ||||||| || ||||||| |||||||||    
T  666928 gttgaatacctacttaagttgatatcaa 666955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 2643960 - 2644004
Alignment:
Q  20 atgtgagagaatcaacaactcaaattaatcaaactgatgaaaata 64  Q
    |||||||||||||||||||||||||||| ||||||  ||||||||    
T  2643960 atgtgagagaatcaacaactcaaattaaccaaactattgaaaata 2644004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 9594209 - 9594298
Alignment:
Q  26 gagaatcaacaactcaaattaatcaaactgatgaaaatatataaaagtcattttcaaccctatagattccatcaaccattagattaacaatgatc 120  Q
    |||||||||||||||||||||| ||||||  ||||||||   | |||  || || |||| |||||||||||||||||||| ||||||||||||||    
T  9594209 gagaatcaacaactcaaattaaccaaactattgaaaata---agaagcaatgttgaacc-tatagattccatcaaccatt-gattaacaatgatc 9594298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 7423856 - 7423899
Alignment:
Q  21 tgtgagagaatcaacaactcaaattaatcaaactgatgaaaata 64  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||    
T  7423856 tgtgagagaatcaacaactcaaattaaccaaactattgaaaata 7423899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 9608057 - 9608138
Alignment:
Q  157 aataacacaaacaaaaactaaccatatatatgttgcagttgaatcccaa-cttaagatgatatcaaactctcaatgtagaca 237  Q
    ||||| ||||| | |||||||| |||||||||| ||| ||||||| ||  |||||| |||||||||||||||  ||||||||    
T  9608057 aataatacaaatagaaactaacaatatatatgtagcacttgaatctcatgcttaaggtgatatcaaactctcgttgtagaca 9608138  T

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Target: scaffold0097 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 202
Target Start/End: Complemental strand, 34336 - 34243
Alignment:
Q  108 attaacaatgatctaacaagtcaacaaaaatcagagcaggcgtaaatcaaataacacaaacaaaaactaaccatatatatgttgcagttgaatcc 202  Q
    ||||||||||||| ||||||||| ||||| ||||||||||| |||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  34336 attaacaatgatcaaacaagtcaccaaaa-tcagagcaggcataacataaataacacaaacaaaaactaaccatatatatgttgcagttgaatcc 34243  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 20301761 - 20301680
Alignment:
Q  156 aaataacacaaacaaaaactaaccatatatatgttgcagttgaatccca-acttaagatgatatcaaactctcaatgtagac 236  Q
    |||||||||||||| ||||||||||||| |||||||||| ||| || ||  |||||| |||||| |||||||||||||||||    
T  20301761 aaataacacaaacagaaactaaccatatctatgttgcagctgagtctcatgcttaaggtgatattaaactctcaatgtagac 20301680  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 20306174 - 20306093
Alignment:
Q  156 aaataacacaaacaaaaactaaccatatatatgttgcagttgaatccca-acttaagatgatatcaaactctcaatgtagac 236  Q
    |||||||||||||| ||||||||||||| |||||||||| ||| || ||  |||||| |||||| |||||||||||||||||    
T  20306174 aaataacacaaacagaaactaaccatatctatgttgcagctgagtctcatgcttaaggtgatattaaactctcaatgtagac 20306093  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 20310578 - 20310497
Alignment:
Q  156 aaataacacaaacaaaaactaaccatatatatgttgcagttgaatccca-acttaagatgatatcaaactctcaatgtagac 236  Q
    |||||||||||||| ||||||||||||| |||||||||| ||| || ||  |||||| |||||| |||||||||||||||||    
T  20310578 aaataacacaaacagaaactaaccatatctatgttgcagctgagtctcatgcttaaggtgatattaaactctcaatgtagac 20310497  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 20293314 - 20293233
Alignment:
Q  156 aaataacacaaacaaaaactaaccatatatatgttgcagttgaatc-ccaacttaagatgatatcaaactctcaatgtagac 236  Q
    |||||| ||||||| ||||||||||||| |||||||||||||  || |   |||||| |||||| |||||||||||||||||    
T  20293314 aaataaaacaaacagaaactaaccatatctatgttgcagttgtgtctcttgcttaaggtgatattaaactctcaatgtagac 20293233  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 236
Target Start/End: Complemental strand, 39299312 - 39299222
Alignment:
Q  147 gcgtaaatcaaataacacaaacaaaaactaaccatatatatgttgcagttgaatccca-acttaagatgatatcaaactctcaatgtagac 236  Q
    |||||||  |||||||||||||||||||||||||| || || ||| ||||||||| ||  |||||| | ||||||| ||||||||||||||    
T  39299312 gcgtaaaataaataacacaaacaaaaactaaccatgtagatcttgtagttgaatctcatgcttaaggtaatatcaagctctcaatgtagac 39299222  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 41456416 - 41456337
Alignment:
Q  156 aaataacacaaacaaaaactaaccatatatatgttgcagttgaatcccaacttaagatgatatcaaactctcaatgtaga 235  Q
    |||||||||||||||||| |||||||||  | |||||| |||||| |   |||||| |||||| ||||||||||||||||    
T  41456416 aaataacacaaacaaaaattaaccatatcaacgttgcatttgaattcgtgcttaaggtgatattaaactctcaatgtaga 41456337  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 33020678 - 33020630
Alignment:
Q  156 aaataacacaaacaaaaactaaccatatatatgttgcagttgaatccca 204  Q
    |||||||| |||||||||  || ||||||| ||||||||||||||||||    
T  33020678 aaataacataaacaaaaataaaacatatatttgttgcagttgaatccca 33020630  T

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