View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8761_low_33 (Length: 206)
Name: NF8761_low_33
Description: NF8761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8761_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 13379097 - 13379267
Alignment:
| Q |
21 |
caaccatggtgtcagagtagcctccatatgtgatagtgccatcaacattcttggaactgtatgtctgaatcatctttgagcagtaattttcgagatcctc |
120 |
Q |
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| T |
13379097 |
caaccatggtgtcagagtagcctccatatgtgatagtgccatcaacattcttggaactgtatgtctgaatcatctttgagcaataattttcgagatcctc |
13379196 |
T |
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| Q |
121 |
gccacaactttgacatgaatggcaggatccaaccatgcaccccacaccaaccttatctccaactttgatgt |
191 |
Q |
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| T |
13379197 |
gccacaactttgacatgaatggcaggatccaaccatgcaccccacaccaaccctatctccaactttgatgt |
13379267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 21 - 188
Target Start/End: Original strand, 13373301 - 13373468
Alignment:
| Q |
21 |
caaccatggtgtcagagtagcctccatatgtgatagtgccatcaacattcttggaactgtatgtctgaatcatctttgagcagtaattttcgagatcctc |
120 |
Q |
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| T |
13373301 |
caaccatggtatcagagtagcctccatatgtgattgttccatcaatattcttggcgccatatgtgaggatcatctttgagcaataattctcgagatcatc |
13373400 |
T |
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| Q |
121 |
gccacaactttgacatgaatggcaggatccaaccatgcaccccacaccaaccttatctccaactttga |
188 |
Q |
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| T |
13373401 |
accacaactttgacatgagtggcaggatccaaccatgcaccctacacctaccttgtctccaactttga |
13373468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 23 - 188
Target Start/End: Complemental strand, 28430569 - 28430404
Alignment:
| Q |
23 |
accatggtgtcagagtagcctccatatgtgatagtgccatcaacattcttggaactgtatgtctgaatcatctttgagcagtaattttcgagatcctcgc |
122 |
Q |
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||||| ||||| |||||||||||||||||||| |||||||||| ||||||||||| |||||| |||||| |||| ||||||||||||||| ||| |
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| T |
28430569 |
accattgtgtcggagtagcctccatatgtgatggtgccatcaagattcttggaaccgtatgtgagaatcacttttggacagtaattttcgagactttcgt |
28430470 |
T |
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| Q |
123 |
cacaactttgacatgaatggcaggatccaaccatgcaccccacaccaaccttatctccaactttga |
188 |
Q |
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||| |||| ||||| ||||||||| |||||||||||| ||||| ||||| ||||||||||||| |
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| T |
28430469 |
tgcaattttggcatgagtggcaggattgaaccatgcacccaacacctaccttgtctccaactttga |
28430404 |
T |
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