View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8761_low_5 (Length: 529)
Name: NF8761_low_5
Description: NF8761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8761_low_5 |
 | |
|
| [»] scaffold0627 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 464; Significance: 0; HSPs: 21)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 18 - 522
Target Start/End: Original strand, 8528684 - 8529204
Alignment:
| Q |
18 |
tccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaaccatcagatt----------------taaaattttacct |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8528684 |
tccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaaccatcagattcaattgccaataaaaataaaattttacct |
8528783 |
T |
|
| Q |
102 |
tgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttatccga |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8528784 |
tgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttatccga |
8528883 |
T |
|
| Q |
202 |
ctcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttcaa |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8528884 |
ctcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttcaa |
8528983 |
T |
|
| Q |
302 |
agtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaat |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8528984 |
agtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaat |
8529083 |
T |
|
| Q |
402 |
gccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccctttaattctcccatgctaataggcctacaa |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529084 |
gccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccctttaattctcccatgctaataggcctacaa |
8529183 |
T |
|
| Q |
502 |
caaaaaacattatgatgtcca |
522 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
8529184 |
caaaaaacattatgatttcca |
8529204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 96 - 492
Target Start/End: Original strand, 8535333 - 8535732
Alignment:
| Q |
96 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8535333 |
ttaccttgagtggatattcagaacctcaatattgtcacctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaaaaattt |
8535432 |
T |
|
| Q |
196 |
atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacctt |
295 |
Q |
| |
|
| |||||| | |||||||||||||| ||| |||||||| |||||||| |||||| ||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
8535433 |
gaactactcccgtaaattcgaaaaacttcgaatccatatttctcaggttcatagtagataaaacaattgcaggaatgatataacaatatggcagcacctt |
8535532 |
T |
|
| Q |
296 |
cttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacga---tccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatga |
392 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| | ||||||||||||| ||| |||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
8535533 |
cttcaaagtgttttattggccagcttaaaccatatctccgtggaacacgactttccgaaggattgaatgaagtatcaatgttgtaaatcttagtccatga |
8535632 |
T |
|
| Q |
393 |
ttctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccctttaattctcccatgctaata |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8535633 |
ttctccaatgccatattcattcataacccacattgaaacatcagataaaaaggtcgaatcacaaatgtaaagaaatccctttaattctcccatgctaata |
8535732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 96 - 486
Target Start/End: Complemental strand, 9074994 - 9074604
Alignment:
| Q |
96 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt |
195 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | ||| |
|
|
| T |
9074994 |
ttaccttgagtggatattcagcacctcgatattgtctcctttcaagacatccttcaatgaaattagacttggaatatgtgggattacttcaaaaaacttt |
9074895 |
T |
|
| Q |
196 |
atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacctt |
295 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||| ||| || ||||||||||| || |||||||| |||||||||||||||||| |
|
|
| T |
9074894 |
gaatgactcccatgaattcgaaaaactttgaatccatatttctcaggttcatagaagataaaacaattgtagcaatgatataacaatatggcagcacctt |
9074795 |
T |
|
| Q |
296 |
cttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacga---tccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatga |
392 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||| || || | || || ||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
9074794 |
cttcaaagtgttttatcggcca---taaacctgaaccccatgtaataagacagcccgaaggattgaacgaagtatcaatgttgtaaactttagtccatga |
9074698 |
T |
|
| Q |
393 |
ttctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccctttaattctcccatg |
486 |
Q |
| |
|
|||| |||| |||||||||||||||||||||| |||||||| ||||| ||| ||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9074697 |
ttcttcaataccatattcattcataacccacactgaaacatcagataaaaatgtccagtcacaaatgtaaagaaatccctttaattctcccatg |
9074604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 96 - 490
Target Start/End: Complemental strand, 1600554 - 1600177
Alignment:
| Q |
96 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt |
195 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| | |||||||| ||||||||||||||||||||||||||||| || ||||||| ||||||| ||| | |
|
|
| T |
1600554 |
ttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagacttggaatatgcgggattatttcaaaacaatct |
1600455 |
T |
|
| Q |
196 |
atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacctt |
295 |
Q |
| |
|
||||||||||||||| |||| ||||| | | |||||| ||||||| || ||| | |||||||| | ||| |||| |||||||||||||||||| |
|
|
| T |
1600454 |
gaacgactcccatgaatttcaaaagctttgcatcgatatttcgcaggttcataatagattaaacaatt---gtaatcatataacaatatggcagcacctt |
1600358 |
T |
|
| Q |
296 |
cttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattc |
395 |
Q |
| |
|
|||||||||||| ||||||||| |||||| ||| || || | ||||||||||| ||||||||| ||||||| ||||||||||||||| |
|
|
| T |
1600357 |
cttcaaagtgttgtatcggcca---taaacccgaacaccatgaa---------aaaggattgaatgaagtatcgtacttgtaaaccttagtccatgattc |
1600270 |
T |
|
| Q |
396 |
tccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccctttaattctcccatgctaa |
490 |
Q |
| |
|
| ||||||||||||| |||||||||||||||| ||||| ||||| |||||| | ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1600269 |
ttcaatgccatattccttcataacccacattggaacatcagataaaaaggtag--tcacaaatgtaaagaaatccctttaattctcccatgctaa |
1600177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 98 - 433
Target Start/End: Original strand, 8636701 - 8637039
Alignment:
| Q |
98 |
accttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttat |
197 |
Q |
| |
|
||||||||||||||||||| ||||| |||||| ||||||||| |||||||||||||| ||||||||||||| ||||| |||| ||||| | | | |
|
|
| T |
8636701 |
accttgagtggatattcagcacctcgatattgtctcctttcacgacatccttcaatgagattagacttggaacatgtggaattatttcaacaaactcgga |
8636800 |
T |
|
| Q |
198 |
ccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttct |
297 |
Q |
| |
|
| | || ||||||| |||||||||||| ||| ||| || ||||| |||||| ||| ||||||| ||||||||||| ||||||||||||| || ||| |
|
|
| T |
8636801 |
agaagtgccttgaattctaaaaactttgaaaccaagtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctct |
8636900 |
T |
|
| Q |
298 |
tcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgat---ccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgatt |
394 |
Q |
| |
|
||||||||||||| |||||| | || |||||||| | | | | || | |||||||| ||| | |||||||||||||||||| |||||||||||||| |
|
|
| T |
8636901 |
tcaaagtgttttaccggccatcatataccataacgctgcgaatcaggtctgcccaaaggactgaccaaagtatcgatgttgtaaaccttagtccatgatt |
8637000 |
T |
|
| Q |
395 |
ctccaatgccatattcattcataacccacattgaaacat |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8637001 |
ctccaatgccatattcattcataacccacattgcaacat |
8637039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 96 - 433
Target Start/End: Original strand, 8644044 - 8644384
Alignment:
| Q |
96 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt |
195 |
Q |
| |
|
||||||||||||||||||||| | |||| ||||| ||||||||| ||||||||||||||| ||||||||||||| ||||| |||| ||||| | |||| |
|
|
| T |
8644044 |
ttaccttgagtggatattcagcatctcagtattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaaca-aattc |
8644142 |
T |
|
| Q |
196 |
atccgac-tcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacct |
294 |
Q |
| |
|
|| | || |||||||||||||||||||| ||| ||| | ||||| |||||| ||| ||||||| ||||||||||| ||||||||||||| || |
|
|
| T |
8644143 |
ggaagaaatgccgtgaattcgaaaaactttgaaagcatgtttcttgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccc |
8644242 |
T |
|
| Q |
295 |
tcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgat---ccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatg |
391 |
Q |
| |
|
|||||||||| ||||| |||||| | ||||||||||| | | | | || | |||||||| ||| | ||||||| |||||||||| ||||||||||| |
|
|
| T |
8644243 |
tcttcaaagttttttaccggccaacataaaccataacgctgcgaatcaggtctgcccaaaggactgatcaaagtatcaatgttgtaaaccttagtccatg |
8644342 |
T |
|
| Q |
392 |
attctccaatgccatattcattcataacccacattgaaacat |
433 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
8644343 |
attctccaatgtcatattcattcataacccacattgcaacat |
8644384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 96 - 433
Target Start/End: Original strand, 8677637 - 8677986
Alignment:
| Q |
96 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt |
195 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||| ||||||||||||| ||||| |||| ||||| | |||| |
|
|
| T |
8677637 |
ttaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaaca-aattc |
8677735 |
T |
|
| Q |
196 |
atccgac-tcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacct |
294 |
Q |
| |
|
|| | || |||||||||||||||||||| |||| ||| || ||||| |||||| ||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
8677736 |
ggaagaagtgccgtgaattcgaaaaactttgaaaccatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagcaccc |
8677835 |
T |
|
| Q |
295 |
tcttcaaagtgttttatcggccagcttaaaccataaccccgtggaaca---cgatccaaaggattga----acg-----aagtatcgatgttgtaaatct |
382 |
Q |
| |
|
|||||||||||||||| |||||| | |||||||||| ||| | | || | |||||||| ||| ||| | |||| |||||||||| || |
|
|
| T |
8677836 |
tcttcaaagtgttttaccggccaacataaaccataatgccgcgaatcaggtctgcccaaaggactgacaggacggaccacaatatcaatgttgtaaacct |
8677935 |
T |
|
| Q |
383 |
tagtccatgattctccaatgccatattcattcataacccacattgaaacat |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
8677936 |
tagtccatgattctccaatgccatattcattcatatcccacattgcaacat |
8677986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 96 - 492
Target Start/End: Complemental strand, 8548365 - 8547984
Alignment:
| Q |
96 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt |
195 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||| ||||||||| |||||||||||||| |||||||||||||| ||| | ||||||||||| | | | |
|
|
| T |
8548365 |
ttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatgttgaattacttcaaatgattgt |
8548266 |
T |
|
| Q |
196 |
atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacctt |
295 |
Q |
| |
|
| ||||||||||||||| |||||| |||||||| || || | ||||| |||||||||| | ||||||||| |||||| ||||||||| | |
|
|
| T |
8548265 |
gaagaagagccatgaattcgaaaatctttgactccatatttatcggggttatagtaagtaaaacaatccaatgaatgatataacaatacggcagcaccct |
8548166 |
T |
|
| Q |
296 |
cttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattc |
395 |
Q |
| |
|
||||||||||||||| |||| | | ||| ||| || ||| ||| |||||||| | ||||||| |||| |||||||||||||||||| || |
|
|
| T |
8548165 |
cttcaaagtgttttaccggcaaacacaaagcatgacgccgcgga---------gaaggattggtcaaagtatcaatgtggtaaatcttagtccatgactc |
8548075 |
T |
|
| Q |
396 |
tccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccctttaattctcccatgctaata |
492 |
Q |
| |
|
| |||||||| |||||||||||||||| ||||| ||| | | || || ||||||||||| ||| |||||||||||||||||| ||||||| |
|
|
| T |
8548074 |
t------ccatattcgttcataacccacattgtaacataagagagatagttccagtcacaaatgtaaagacatccctttaattctcccaagctaata |
8547984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 362 - 427
Target Start/End: Complemental strand, 2905003 - 2904938
Alignment:
| Q |
362 |
aagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattg |
427 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2905003 |
aagtatcaatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattg |
2904938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 365 - 497
Target Start/End: Original strand, 8641475 - 8641613
Alignment:
| Q |
365 |
tatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcg------gatcacaaat |
458 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||| | | | |||||||| |||||||||| |
|
|
| T |
8641475 |
tatcaatgttgtaagccttagtccatgattctccaatgccatattcattcataacccacactgtgacatcaaagaaaaaggtcgagtcacgatcacaaat |
8641574 |
T |
|
| Q |
459 |
gtatagaaatccctttaattctcccatgctaataggcct |
497 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||| |||| |
|
|
| T |
8641575 |
gtaaggaaatccctttaactctcccatgctaataagcct |
8641613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 360 - 434
Target Start/End: Complemental strand, 2856897 - 2856823
Alignment:
| Q |
360 |
cgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacatt |
434 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2856897 |
cgaagtatcaatgttgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacatt |
2856823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 360 - 434
Target Start/End: Complemental strand, 2874507 - 2874433
Alignment:
| Q |
360 |
cgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacatt |
434 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2874507 |
cgaagtatcaatgttgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacatt |
2874433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 360 - 434
Target Start/End: Complemental strand, 2845070 - 2844996
Alignment:
| Q |
360 |
cgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacatt |
434 |
Q |
| |
|
||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2845070 |
cgaagtatcaatgctgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacatt |
2844996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 8535225 - 8535294
Alignment:
| Q |
20 |
cctttgaatactcgactcatgattacaatcaattactatgac-ttgtaaggaagcatcaaccatcagatt |
88 |
Q |
| |
|
|||||||||||||| || ||||||| |||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
8535225 |
cctttgaatactcgtcttatgattaaaatcaattactatgactttgtaagggagcatcaaccatcagatt |
8535294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 8641242 - 8641297
Alignment:
| Q |
132 |
tcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaa |
187 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
8641242 |
tcctttcacgacatccttcaatgagattagacttggaatatgtggaattacttcaa |
8641297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 334
Target Start/End: Original strand, 8641357 - 8641435
Alignment:
| Q |
256 |
aaacaattggaggaatgatatgacaatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataacccc |
334 |
Q |
| |
|
||||||||| ||||||||||| || ||| |||||||| |||||||||||| ||| |||||| | || ||||||||||| |
|
|
| T |
8641357 |
aaacaattgcaggaatgatataaccataacgcagcaccatcttcaaagtgtattaccggccaacatacaccataacccc |
8641435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 8548478 - 8548409
Alignment:
| Q |
19 |
ccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaaccatcagatt |
88 |
Q |
| |
|
|||||||||||||| || ||||||| ||| ||||||||||| || || || |||||||||||||||||| |
|
|
| T |
8548478 |
ccctttgaatactcatcttatgattaaaattaattactatgatttttatgggagcatcaaccatcagatt |
8548409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 2857018 - 2856974
Alignment:
| Q |
203 |
tcccatgaattcgaaaaactttgaacccatatttttcaggttcgt |
247 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
2857018 |
tcccttgaattcgaaaaactttgaacccatgtttctcaggttcgt |
2856974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 2874628 - 2874584
Alignment:
| Q |
203 |
tcccatgaattcgaaaaactttgaacccatatttttcaggttcgt |
247 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
2874628 |
tcccttgaattcgaaaaactttgaacccatgtttctcaggttcgt |
2874584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 9003305 - 9003393
Alignment:
| Q |
99 |
ccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaa |
187 |
Q |
| |
|
|||||||| || ||||| ||||||| |||| |||| || | | | ||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
9003305 |
ccttgagtagacattcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtggaattacttcaa |
9003393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 2845191 - 2845147
Alignment:
| Q |
203 |
tcccatgaattcgaaaaactttgaacccatatttttcaggttcgt |
247 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| ||| |||||||||| |
|
|
| T |
2845191 |
tcccttgaattcgaaaaactttgaactcatgtttctcaggttcgt |
2845147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 18 - 522
Target Start/End: Original strand, 9442845 - 9443365
Alignment:
| Q |
18 |
tccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaaccatcagatt----------------taaaattttacct |
101 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
9442845 |
tccctttgaatactcatctcatgattacaatcaattactatgacttgtaaagaagcatcaaccatcagattcaattgccaataaaaataaaattttacct |
9442944 |
T |
|
| Q |
102 |
tgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttatccga |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
9442945 |
tgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgttggattacttcaaaataatttttccga |
9443044 |
T |
|
| Q |
202 |
ctcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttcaa |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443045 |
ctcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattgaaggaatgatatgacaatatggcagcaccttcttcaa |
9443144 |
T |
|
| Q |
302 |
agtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaat |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443145 |
agtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaat |
9443244 |
T |
|
| Q |
402 |
gccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccctttaattctcccatgctaataggcctacaa |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
9443245 |
gccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccctttaattctcccatgctaataggcctacta |
9443344 |
T |
|
| Q |
502 |
caaaaaacattatgatgtcca |
522 |
Q |
| |
|
||| |||||||||||| |||| |
|
|
| T |
9443345 |
caataaacattatgatttcca |
9443365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 4e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 96 - 497
Target Start/End: Complemental strand, 48362128 - 48361722
Alignment:
| Q |
96 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaatta-----gacttggaatgtgtgggattacttcaaaat |
190 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||| |||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
48362128 |
ttaccttgagtggacattcaacacctccatattatctcctttcaagacatccttcaatgaaattaaattagacttggaatatgtgggattacttcaaaag |
48362029 |
T |
|
| Q |
191 |
aatttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagc |
290 |
Q |
| |
|
|| | |||||||| ||||| ||||| ||||| | | |||||| |||||||| || ||| | |||| | | ||||||||||| ||||||||||||| |
|
|
| T |
48362028 |
aacctgaacgactcccgtgaatatgaaaagctttgcatctatatttctcaggttcataatagattaaacggtcgtaggaatgatataacaatatggcagc |
48361929 |
T |
|
| Q |
291 |
accttcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgatc---caaaggattgaacgaagtatcgatgttgtaaatcttagtc |
387 |
Q |
| |
|
||||||||||||||||||||||||||| |||| | || || | | || | | |||||||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
48361928 |
accttcttcaaagtgttttatcggcca---taaagctgaatgccaagaagcaaaactgctcgaaggattgaacgcagtattgatgttgtaaaccttagtc |
48361832 |
T |
|
| Q |
388 |
catgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccctttaattctcccatgc |
487 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
48361831 |
tatgattcttcaataccatattcattcataacccacattgaaacatcagatgcaaaggtcgagtcacaaatgtaaagaaatccctttaattctcccatgc |
48361732 |
T |
|
| Q |
488 |
taataggcct |
497 |
Q |
| |
|
||||| |||| |
|
|
| T |
48361731 |
taatatgcct |
48361722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 121 - 498
Target Start/End: Original strand, 35779694 - 35780065
Alignment:
| Q |
121 |
tcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttatccgactcccatgaattcgaaaaa |
220 |
Q |
| |
|
||||||||| ||||||| | ||||||||||||||| |||||||||||||| ||||| |||||||||| | | ||| ||| ||||| |||||||||||| |
|
|
| T |
35779694 |
tcaatattgtctccttttacaacatccttcaatgatattagacttggaatatgtggaattacttcaacagattttgaacgagtcccacgaattcgaaaaa |
35779793 |
T |
|
| Q |
221 |
ctttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttcaaagtgttttatcggccagct |
320 |
Q |
| |
|
||||| | |||||||| |||||||| ||||| ||||||||||| | ||||||||| ||||||||||| |||||| |||||| |||||| | |
|
|
| T |
35779794 |
ctttgtatccatatttctcaggttcaaagtagataaaacaattgcatgaatgatataacaatatggca---------tcaaagggttttaccggccaaca |
35779884 |
T |
|
| Q |
321 |
taaaccataaccccgtggaacacgat---ccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcata |
417 |
Q |
| |
|
||||||||||| | ||| || | ||| | | || ||||| |||||| || |||||||||| ||||||||| |||||| ||||||||| ||||||||| |
|
|
| T |
35779885 |
taaaccataacgcggtgaaataggatagcctagagaattgaccgaagtctcaatgttgtaaaccttagtccacgattcttcaatgccatgctcattcata |
35779984 |
T |
|
| Q |
418 |
acccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccctttaattctcccatgctaataggccta |
498 |
Q |
| |
|
|||||||||| ||||| | | ||| || ||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35779985 |
acccacattgtaacatcaacaaaaaaattcaagtcacaaatgtaaagaaatccctttaattctcccatgctaatacgccta |
35780065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 96 - 317
Target Start/End: Original strand, 5130638 - 5130860
Alignment:
| Q |
96 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt |
195 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||| ||||||||| || |||||| | |||||||||||||| ||| ||||| |||||||||| | ||| |
|
|
| T |
5130638 |
ttaccttgagtgaatattcagcacctcaatattgtctcctttcacaatatcctttagtgaaattagacttgaaatatgtggaattacttcaatctttttt |
5130737 |
T |
|
| Q |
196 |
atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagt-aggtaaaacaattggaggaatgatatgacaatatggcagcacct |
294 |
Q |
| |
|
| | ||||||||||||||||||||||| | | |||||| || ||||| | || || |||||| ||| ||||||||||| ||||||||||||||| |
|
|
| T |
5130738 |
gaacaagtcccatgaattcgaaaaactttgtatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccc |
5130837 |
T |
|
| Q |
295 |
tcttcaaagtgttttatcggcca |
317 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
5130838 |
tcttcaaagtgttttaccggcca |
5130860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 350 - 439
Target Start/End: Complemental strand, 26324287 - 26324198
Alignment:
| Q |
350 |
aaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagata |
439 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26324287 |
aaggattgaacgaagcatcgatgttgtaaatcttagtccatgattctccagtgccatattcattcataacccacattgaaacatcagata |
26324198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 487
Target Start/End: Original strand, 5130959 - 5130996
Alignment:
| Q |
450 |
atcacaaatgtatagaaatccctttaattctcccatgc |
487 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
5130959 |
atcagaaatgtaaagaaatccctttaattctcccatgc |
5130996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 96 - 492
Target Start/End: Original strand, 16716179 - 16716577
Alignment:
| Q |
96 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataa--t |
193 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |||||||||||||| ||||| ||||||| |||| | | |
|
|
| T |
16716179 |
ttaccttgagtggatattcaacacctcaatattctctcctttcacggcatccttcaatgagattagacttggaatatgtggaattactttaaaaaatcct |
16716278 |
T |
|
| Q |
194 |
ttat---------ccgact-cccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaata |
283 |
Q |
| |
|
||| | || | |||||||||||||||| |||| |||||||| | ||| || ||||| |||||||||| ||||||||| |||||| |
|
|
| T |
16716279 |
ttaaaataccttgcagaatacccatgaattcgaaaacgcttgacaccatatttattaggctcatagtaagtaaaacaatcatttgaatgatataacaata |
16716378 |
T |
|
| Q |
284 |
tggcagcaccttcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatcgatgttgtaaatctt |
383 |
Q |
| |
|
| ||||||| |||||||||||||||| ||| | | ||| ||| ||||| ||||| ||||| ||| || ||||||| |||| ||||| ||| |
|
|
| T |
16716379 |
cgccagcaccctcttcaaagtgttttaccggaaaacacaaaacatcacccc-------acgat--aaaggtttgtac-aagtatcaatgtggtaaacctt |
16716468 |
T |
|
| Q |
384 |
agtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccctttaattctccc |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| | | ||| ||||||||||||||||||||||||||||| |
|
|
| T |
16716469 |
agtccatgattctccaatgccatattcattcataacccacattgtaacatattcgaagaagtttgagtcagaaatgtatagaaatccctttaattctccc |
16716568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 349 - 492
Target Start/End: Original strand, 4735 - 4878
Alignment:
| Q |
349 |
aaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcg |
448 |
Q |
| |
|
||||||||| || |||||| |||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| || || | | |
|
|
| T |
4735 |
aaaggattgtacaaagtattaatgtggtaaaccttagtccatgattcaccaatgccatattcattcataacccacattgtaacatattttaaggagtttg |
4834 |
T |
|
| Q |
449 |
gatcacaaatgtatagaaatccctttaattctcccatgctaata |
492 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4835 |
agtcacaaatgtaaagaaatccctttaattctcccatgctaata |
4878 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 96 - 191
Target Start/End: Original strand, 4492 - 4587
Alignment:
| Q |
96 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaata |
191 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||| |||||||||||||| ||||| |||||||||||||| |
|
|
| T |
4492 |
ttaccttgagtggatattcaacacctcaatattgtctcctttcacggcatccttcaatgagattagacttggaatatgtggaattacttcaaaata |
4587 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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