View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8761_low_7 (Length: 470)
Name: NF8761_low_7
Description: NF8761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8761_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 12 - 434
Target Start/End: Complemental strand, 7524261 - 7523841
Alignment:
| Q |
12 |
agatgaaatcaaactgtttaatatggacttttgggaatttatcaatgaaaataaaagtgttagcaaattcgtagattcttttccaagaaactcataaaat |
111 |
Q |
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| T |
7524261 |
agatgaaatcaaactgtttaatatggacttttgggaatttatcaatgaaaataaaagtgttagcaaattcgtagatttttttccaagaaactcataaaat |
7524162 |
T |
|
| Q |
112 |
gatagatatatacgttttgttgcgaactttggtacaaaaggtcaggatgatggatttactctgctgtgaacaagttcaacactttcaattctnnnnnnnc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7524161 |
gatagatatatacgttttgttgcgaactttggtacaaaaggtcaggatgatggatttactctgctgtgaacaagttcaacactttcaattctaaaaaaac |
7524062 |
T |
|
| Q |
212 |
aaagtcaagggatctcaagttcagcaaatcaactaaagcatgctgactacagatgccaaaagtacatgtaattaagattaagatgtagtaattaacaacn |
311 |
Q |
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| T |
7524061 |
aaagtcaagggatctcaagttcagcaaatcaactaaagcatgctgactacagatgccaaaagtacatgtaattaagattaagatgtagtaattaacaaca |
7523962 |
T |
|
| Q |
312 |
nnnnnncaagtaattaatttatagtttcttgaatcatgacacatagtaagaaaaccttggcccttataagacaagaaattaatttcctctatcttgaata |
411 |
Q |
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| T |
7523961 |
aaaaaacaagtaattaatttctagtttcttgaatcatgacacattgtaagaaaaccttggccct--taagacaagaaattaatttcctctatcttgaata |
7523864 |
T |
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| Q |
412 |
cactattagcagtagttggtgtt |
434 |
Q |
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| T |
7523863 |
cactattagtagtagttggtgtt |
7523841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 12 - 437
Target Start/End: Original strand, 49536142 - 49536577
Alignment:
| Q |
12 |
agatgaaatcaaactgtttaata---tggacttttgggaatttatcaatgaaaataaaagtgttagcaaattcgtag-------attcttttccaagaaa |
101 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||| |||||||||| ||||||||||||||||| | |||||||||||||||| |
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| T |
49536142 |
agatgaaatcaaacggtttaataatatggacttttgggaatttaccaatgaaaatgaaagtgttagcaaattcatgattcatgaattcttttccaagaaa |
49536241 |
T |
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| Q |
102 |
ctca--taaaatgatagatatatacgttttgttgcgaactttggtacaaaa---ggtcaggatgatggatttactctgctgtgaacaagttcaacacttt |
196 |
Q |
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|||| ||||||||||||||||||||| |||||| |||||| |||| || | ||||||||||||| || ||||||| ||||||||||||||||||||| |
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| T |
49536242 |
ctcagataaaatgatagatatatacgtcttgttgtgaacttcggtagaagaagaggtcaggatgatgaatatactctgatgtgaacaagttcaacacttt |
49536341 |
T |
|
| Q |
197 |
caattctnnnnnnncaaagtcaagggatctcaagttcagcaaatcaactaaagcatgctgactacagatgccaaaagtacatgtaattaagattaagatg |
296 |
Q |
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| T |
49536342 |
caattctaaatatacaaagtcaagggatctcaagttcagcaaatcaactaaagcatgctgattacaaatgacaaaagtacatgtaatttagattaagatg |
49536441 |
T |
|
| Q |
297 |
tagtaattaacaac-nnnnnnncaagtaattaa-tttatagtttcttgaatcatgacacatagtaagaaaaccttggcccttataagacaagaaattaat |
394 |
Q |
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| T |
49536442 |
tagtaatcaacaacaaacaaaacaagtaattaacttcctag-ttgtggaatcatgacacat--taagaaaaccttggccct--taagacaagaaattaat |
49536536 |
T |
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| Q |
395 |
ttcctctatcttgaatacactattagcagtagttggtgttcta |
437 |
Q |
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| T |
49536537 |
ttcctctatcttgaat--attattagtagtagttggtgttcta |
49536577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 173; Significance: 8e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 119 - 436
Target Start/End: Original strand, 38176580 - 38176892
Alignment:
| Q |
119 |
atatacgttttgttgcgaactttggtacaaaaggtcaggatgatggatttactctgctgtgaacaagttcaacactttcaattctnnnnnnncaaagtc- |
217 |
Q |
| |
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||||||||||||||| ||||||||||| || |||||| |||||||||| ||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
38176580 |
atatacgttttgttgtgaactttggtagaagaggtcaagatgatggatatactctgatgtgaacaagttcaacactttcaattctaaaaaaacaaagtct |
38176679 |
T |
|
| Q |
218 |
aagggatctcaagttcagcaaatcaactaaagcatgctgactacagatgccaaaagtacatgtaattaagattaagatgtagtaattaacaac-nnnnnn |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38176680 |
aagggatctcaagttcagcaaatcaactaaagcatgctgattacagatgccaaaagtacatgtaattaagattaagctgtagtaattaacaacaaacaaa |
38176779 |
T |
|
| Q |
317 |
ncaagtaattaatttatagtttcttgaatcatgacacatagtaagaaaaccttggcccttataagacaagaaattaatttcctctatcttgaatacacta |
416 |
Q |
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| T |
38176780 |
acaagtaattaatttctag-ttgttgaatcatgacacat--taagaaaaccttggccct--taagacaagaaattaatttcctctatcttgaat--atta |
38176872 |
T |
|
| Q |
417 |
ttagcagtagttggtgttct |
436 |
Q |
| |
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|||| ||||||||||||||| |
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| T |
38176873 |
ttagtagtagttggtgttct |
38176892 |
T |
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