View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8761_low_8 (Length: 464)

Name: NF8761_low_8
Description: NF8761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8761_low_8
NF8761_low_8
[»] chr5 (6 HSPs)
chr5 (250-448)||(32268989-32269187)
chr5 (78-197)||(32268817-32268936)
chr5 (12-189)||(41900181-41900356)
chr5 (12-110)||(32268729-32268825)
chr5 (129-196)||(41886279-41886346)
chr5 (62-111)||(12846943-12846992)
[»] chr7 (4 HSPs)
chr7 (55-122)||(15091347-15091414)
chr7 (58-120)||(10168806-10168868)
chr7 (58-120)||(10176331-10176393)
chr7 (142-183)||(10616209-10616250)
[»] chr4 (18 HSPs)
chr4 (55-116)||(2460597-2460658)
chr4 (61-134)||(2367656-2367729)
chr4 (67-116)||(2547544-2547593)
chr4 (61-113)||(2381378-2381430)
chr4 (55-115)||(6007665-6007725)
chr4 (61-119)||(566629-566687)
chr4 (61-114)||(2525763-2525816)
chr4 (67-112)||(12124836-12124881)
chr4 (67-112)||(12126892-12126937)
chr4 (55-120)||(55907434-55907499)
chr4 (61-113)||(2486313-2486365)
chr4 (61-113)||(5035628-5035680)
chr4 (55-101)||(1547469-1547515)
chr4 (69-119)||(2376228-2376278)
chr4 (75-113)||(2380123-2380161)
chr4 (67-116)||(2472104-2472153)
chr4 (82-122)||(8445271-8445311)
chr4 (62-102)||(12121009-12121049)
[»] chr3 (2 HSPs)
chr3 (55-122)||(513426-513493)
chr3 (69-120)||(51763146-51763197)
[»] chr6 (5 HSPs)
chr6 (61-121)||(14821628-14821688)
chr6 (61-113)||(6395781-6395833)
chr6 (65-113)||(6427432-6427480)
chr6 (67-101)||(6437161-6437195)
chr6 (61-103)||(7993319-7993361)
[»] chr8 (2 HSPs)
chr8 (61-120)||(32152212-32152271)
chr8 (67-113)||(39516869-39516915)
[»] chr2 (2 HSPs)
chr2 (55-120)||(1036176-1036241)
chr2 (67-120)||(44575177-44575230)
[»] chr1 (3 HSPs)
chr1 (61-110)||(15837967-15838016)
chr1 (61-120)||(33161439-33161498)
chr1 (69-113)||(52085556-52085600)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 3e-86; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 250 - 448
Target Start/End: Original strand, 32268989 - 32269187
Alignment:
Q  250 gtcgaagtggactccatagttaacagatgagtgccgccagtggtcgtgaggcgacttgtgaatctaggttaagccaagtgaagaggacgaaagttatatt 349  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32268989 gtcgaagtggactccatagttagcagatgagtgccgccagtggtcgtgaggcgacttgtgaatctaggttaagccaagtgaagaggacgaaaattatatt 32269088  T
Q  350 actaattcctctaatcgtgttttaatggnnnnnnnatgccgttaaattagtgaataaactagtgtttaattagtgggttaatagttgagtgtgtaaaaa 448  Q
    |||||| |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32269089 actaatacctctaatcgtgttttaatggtttttttatgccgttaaattagtgaataaactagtgtttaattagtgggttaatagttgattgtgtaaaaa 32269187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 78 - 197
Target Start/End: Original strand, 32268817 - 32268936
Alignment:
Q  78 gatggagagtaactgtttggagacgatggagagagatttcaagcatcgattgttgtctttcaagaatttgaagacacattcccaacactcatctggtaga 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32268817 gatggagagtaactgtttggagacgatggagagagatttcaagcatcgattgttgtctttcaagaatttgaagacacattcccaacactcatctggtaaa 32268916  T
Q  178 tatgaaccagaaatcattga 197  Q
    ||||||||||||||||||||    
T  32268917 tatgaaccagaaatcattga 32268936  T

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Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 12 - 189
Target Start/End: Complemental strand, 41900356 - 41900181
Alignment:
Q  12 agagagtaggaagaagaggaagggttggatcatagactgtgaaagagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagaga 111  Q
    ||||||||||||||| ||| || ||| ||||| ||| |||  |||||| |||||||||  ||||||||||||||| ||||||||||||||||  ||||||    
T  41900356 agagagtaggaagaaaagggagagtttgatcacagattgt--aagagagaatcgaagagtgttggtgatggagagaaactgtttggagacgagtgagaga 41900259  T
Q  112 gatttcaagcatcgattgttgtctttcaagaatttgaagacacattcccaacactcatctggtagatatgaaccagaa 189  Q
    ||||||||| |  |||| | |||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41900258 gatttcaagtagtgattatcgtctttgaggaatttgaagacacattcccaacactcatctggtaaatatgaaccagaa 41900181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 32268729 - 32268825
Alignment:
Q  12 agagagtaggaagaagaggaagggttggatcatagactgtgaaagagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagag 110  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32268729 agagagtaggaagaaaaggaagggttggatcatagactgtgagagaga--atcgaagacggttggtgatggagagtaactgtttggagacgatggagag 32268825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 41886346 - 41886279
Alignment:
Q  129 gttgtctttcaagaatttgaagacacattcccaacactcatctggtagatatgaaccagaaatcattg 196  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||| |||  |||||  ||||||||    
T  41886346 gttgtctttcaggaatttgaagacacattcccaacactcatcaggtaaatagaaaccaccaatcattg 41886279  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 12846943 - 12846992
Alignment:
Q  62 atcgaagacggttggtgatggagagtaactgtttggagacgatggagaga 111  Q
    |||| |||||||||||||||||||| ||||| ||||| |||| |||||||    
T  12846943 atcggagacggttggtgatggagaggaactgcttggaaacgagggagaga 12846992  T

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Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 15091414 - 15091347
Alignment:
Q  55 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaagca 122  Q
    ||||| ||| |||||| ||||||||||||||| |||||||||||||||| ||||||||| ||||||||    
T  15091414 agagaaaatagaagactgttggtgatggagaggaactgtttggagacgagggagagagaattcaagca 15091347  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 10168868 - 10168806
Alignment:
Q  58 gataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 120  Q
    ||||||||||||  ||||||||||||||| |||||||||||||| | ||| ||||| ||||||    
T  10168868 gataatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaag 10168806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 10176393 - 10176331
Alignment:
Q  58 gataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 120  Q
    ||||||||||||  ||||||||||||||| |||||||||||||| | ||| ||||| ||||||    
T  10176393 gataatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaag 10176331  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 10616209 - 10616250
Alignment:
Q  142 aatttgaagacacattcccaacactcatctggtagatatgaa 183  Q
    |||||||||| |||||||||||||||||| |||| |||||||    
T  10616209 aatttgaagatacattcccaacactcatcaggtaaatatgaa 10616250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 2460597 - 2460658
Alignment:
Q  55 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagattt 116  Q
    ||||| ||||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||    
T  2460597 agagagaatcggagacgattggtgatggagaggaactgtttggagaccatggagagagattt 2460658  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 2367729 - 2367656
Alignment:
Q  61 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaagcatcgattgttgtc 134  Q
    ||||| |||||||||||||||||||| || ||||||||||||||||| |||| || |||| | || ||||||||    
T  2367729 aatcggagacggttggtgatggagagaaattgtttggagacgatggaaagaggttccaagtagcggttgttgtc 2367656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 2547544 - 2547593
Alignment:
Q  67 agacggttggtgatggagagtaactgtttggagacgatggagagagattt 116  Q
    ||||||||||||||||| || ||||||||||||||||||||||| |||||    
T  2547544 agacggttggtgatggacagaaactgtttggagacgatggagagcgattt 2547593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 2381430 - 2381378
Alignment:
Q  61 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagaga 113  Q
    ||||| |||| ||||||||| |||||||||||||||||||||||||| |||||    
T  2381430 aatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagaga 2381378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 6007665 - 6007725
Alignment:
Q  55 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatt 115  Q
    ||||| ||||| |||| ||||||||||||||| |||||||| ||||||| |||||||||||    
T  6007665 agagagaatcggagactgttggtgatggagaggaactgtttcgagacgagggagagagatt 6007725  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 566629 - 566687
Alignment:
Q  61 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaa 119  Q
    |||||||||| || |||||||||||| |||||||||||||| | ||||||||| |||||    
T  566629 aatcgaagactgtcggtgatggagagaaactgtttggagactaaggagagagaattcaa 566687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 2525763 - 2525816
Alignment:
Q  61 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagat 114  Q
    |||||||||| |||||||||||| || |||||||| ||||||| ||||||||||    
T  2525763 aatcgaagactgttggtgatggacagaaactgttttgagacgagggagagagat 2525816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 12124836 - 12124881
Alignment:
Q  67 agacggttggtgatggagagtaactgtttggagacgatggagagag 112  Q
    |||||||||||||||||||| || ||||||||||| ||||||||||    
T  12124836 agacggttggtgatggagagaaattgtttggagacaatggagagag 12124881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 12126892 - 12126937
Alignment:
Q  67 agacggttggtgatggagagtaactgtttggagacgatggagagag 112  Q
    |||||||||||||||||||| || ||||||||||| ||||||||||    
T  12126892 agacggttggtgatggagagaaattgtttggagacaatggagagag 12126937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 55907499 - 55907434
Alignment:
Q  55 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 120  Q
    ||||| |||||||||  ||||||||  ||||| ||||||||||||||| | |||||||||||||||    
T  55907499 agagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaag 55907434  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 2486313 - 2486365
Alignment:
Q  61 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagaga 113  Q
    ||||| ||||||||||||||||| || |||||||| ||||||| |||||||||    
T  2486313 aatcggagacggttggtgatggacagaaactgttttgagacgagggagagaga 2486365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 5035628 - 5035680
Alignment:
Q  61 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagaga 113  Q
    |||||||||||||||||||||||||| |||||||| || |||| ||| |||||    
T  5035628 aatcgaagacggttggtgatggagagaaactgttttgaaacgaaggaaagaga 5035680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 1547515 - 1547469
Alignment:
Q  55 agagataatcgaagacggttggtgatggagagtaactgtttggagac 101  Q
    ||||| ||||| |||||||||||||||||||| || |||||||||||    
T  1547515 agagagaatcggagacggttggtgatggagaggaattgtttggagac 1547469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 2376278 - 2376228
Alignment:
Q  69 acggttggtgatggagagtaactgtttggagacgatggagagagatttcaa 119  Q
    |||||||||||||||||| ||   ||||||||||||||||||||| |||||    
T  2376278 acggttggtgatggagagaaaagttttggagacgatggagagagacttcaa 2376228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 113
Target Start/End: Complemental strand, 2380161 - 2380123
Alignment:
Q  75 ggtgatggagagtaactgtttggagacgatggagagaga 113  Q
    |||||| |||||||||||||||||||||||||| |||||    
T  2380161 ggtgatcgagagtaactgtttggagacgatggaaagaga 2380123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 2472104 - 2472153
Alignment:
Q  67 agacggttggtgatggagagtaactgtttggagacgatggagagagattt 116  Q
    ||||| |||||||||||||  |||||||||||||| ||||| ||||||||    
T  2472104 agacgattggtgatggagaaaaactgtttggagaccatggaaagagattt 2472153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 8445311 - 8445271
Alignment:
Q  82 gagagtaactgtttggagacgatggagagagatttcaagca 122  Q
    |||||||||||||| ||||||||||||||||| || |||||    
T  8445311 gagagtaactgttttgagacgatggagagagactttaagca 8445271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 12121049 - 12121009
Alignment:
Q  62 atcgaagacggttggtgatggagagtaactgtttggagacg 102  Q
    ||||||||||||||||||||||||| ||||| || ||||||    
T  12121049 atcgaagacggttggtgatggagaggaactgctttgagacg 12121009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 513493 - 513426
Alignment:
Q  55 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaagca 122  Q
    ||||| ||||| |||  |||||||||||||||||||||||| ||||||  ||||||||||||||||||    
T  513493 agagagaatcggagattgttggtgatggagagtaactgttttgagacggcggagagagatttcaagca 513426  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 51763197 - 51763146
Alignment:
Q  69 acggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 120  Q
    ||||| |||||||||||| ||||||||||| |||||||||||||| ||||||    
T  51763197 acggtgggtgatggagaggaactgtttggaaacgatggagagagaattcaag 51763146  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 14821628 - 14821688
Alignment:
Q  61 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaagc 121  Q
    ||||||||||| |||||||| ||||| ||||| |||||||||| ||||||| |||||||||    
T  14821628 aatcgaagacgattggtgatagagaggaactgcttggagacgagggagagacatttcaagc 14821688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 6395781 - 6395833
Alignment:
Q  61 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagaga 113  Q
    ||||||||| | |||||||||||||| ||||| |||||||||| |||||||||    
T  6395781 aatcgaagatgattggtgatggagaggaactgcttggagacgagggagagaga 6395833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 6427432 - 6427480
Alignment:
Q  65 gaagacggttggtgatggagagtaactgtttggagacgatggagagaga 113  Q
    ||||||| |||||||||||||| ||||| |||||||||| |||||||||    
T  6427432 gaagacgattggtgatggagaggaactgcttggagacgagggagagaga 6427480  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 101
Target Start/End: Original strand, 6437161 - 6437195
Alignment:
Q  67 agacggttggtgatggagagtaactgtttggagac 101  Q
    |||||||||||||||||||| ||||||||||||||    
T  6437161 agacggttggtgatggagaggaactgtttggagac 6437195  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 7993361 - 7993319
Alignment:
Q  61 aatcgaagacggttggtgatggagagtaactgtttggagacga 103  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||    
T  7993361 aatcggagacggctggtgatggagaggaactgtttggagacga 7993319  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 32152212 - 32152271
Alignment:
Q  61 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 120  Q
    ||||| |||| ||||||||||||||| |||||||||||||||| |||||| || ||||||    
T  32152212 aatcggagactgttggtgatggagaggaactgtttggagacgagggagagtgaattcaag 32152271  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 39516869 - 39516915
Alignment:
Q  67 agacggttggtgatggagagtaactgtttggagacgatggagagaga 113  Q
    |||||||||||||||| ||| || ||| |||||||||||||||||||    
T  39516869 agacggttggtgatggcgagaaattgtctggagacgatggagagaga 39516915  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 1036241 - 1036176
Alignment:
Q  55 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 120  Q
    ||||| |||||||||  ||||||||  ||||| ||||||||||||||| | |||||||||||||||    
T  1036241 agagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaag 1036176  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 44575230 - 44575177
Alignment:
Q  67 agacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 120  Q
    ||||| |||||||| ||||| |||||||| ||||||||||||||||| ||||||    
T  44575230 agacgattggtgattgagagaaactgttttgagacgatggagagagacttcaag 44575177  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 15838016 - 15837967
Alignment:
Q  61 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagag 110  Q
    ||||| |||||||||||||||||||| |||||||||||||| || |||||    
T  15838016 aatcggagacggttggtgatggagagaaactgtttggagaccatcgagag 15837967  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 33161439 - 33161498
Alignment:
Q  61 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 120  Q
    ||||||||||  || ||||||||||| |||||||||||||||| ||| ||||| ||||||    
T  33161439 aatcgaagactattagtgatggagagaaactgtttggagacgagggatagagaattcaag 33161498  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 52085556 - 52085600
Alignment:
Q  69 acggttggtgatggagagtaactgtttggagacgatggagagaga 113  Q
    ||||||||||||||| || |||| ||||||||||||||| |||||    
T  52085556 acggttggtgatggaaaggaactttttggagacgatggaaagaga 52085600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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