View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8761_low_9 (Length: 461)
Name: NF8761_low_9
Description: NF8761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8761_low_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 7459616 - 7459177
Alignment:
| Q |
1 |
tccaaccaaacactaagttgtgaatcaactccaaccaagtatttttcaccaacttacttatccaaccaaacgcaataggtgattataccgataaactaaa |
100 |
Q |
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| T |
7459616 |
tccaaccaaacactaagttgtgaatcaactccaaccaagtatttttcaccaacttacttatccaaccaaacgtaatagatgattataccgataatctaaa |
7459517 |
T |
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| Q |
101 |
gcaaatacaaaagaatgtatatgatttaattaataaggataataaataaactctcgtaagaattgagataagggtatgctcaaaagaaataacatgtcaa |
200 |
Q |
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| T |
7459516 |
gcaaatacaaaagaatgtatatgatttaattaataaggataataaatacactctcgtaagaattgagataagggtatgctcagaagaaataacatgtcaa |
7459417 |
T |
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| Q |
201 |
attcttaggaggaagtagtgttttagatatagataatgcattcataaaacatgtccaattaaaagagattttctttctaacaatcatctcaaacattcca |
300 |
Q |
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| T |
7459416 |
attcttaggaggaagtagtgttttagatatagataatgcattcataaaacatgtccaattaaaagagattttctttctaacaatcatctcaaacattcca |
7459317 |
T |
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| Q |
301 |
tatcaagtgaaatatcttaaacttaatcgataaggttgaaaggataatcgatcactgtgaactatctttgctttttatgaagtttatggtacaaaaggcg |
400 |
Q |
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| T |
7459316 |
tatcaagtgaaatatcttaaacttaatc---------------------gatcactattaactatctttgctttttatgaagcttatggtacaaaaggcg |
7459238 |
T |
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| Q |
401 |
acaatagaatcaatttcaaaatagttaaaaatcaagaaagatgaaccaacatccatcaaga |
461 |
Q |
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| T |
7459237 |
acaatagaatcaatttcaaaatagttaaaaatcaagaaagatgaaccaacatccatcaaga |
7459177 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 17336615 - 17336542
Alignment:
| Q |
1 |
tccaaccaaacactaagttgtgaatcaactccaaccaagtatttttcaccaacttacttatccaaccaaacgcaataggtg |
81 |
Q |
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| T |
17336615 |
tccaaccaaagactaagttgtgaatca-------ccaagtattttacaccaacttacttatcaaaccaaatacaataggtg |
17336542 |
T |
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