View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8762_high_5 (Length: 440)
Name: NF8762_high_5
Description: NF8762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8762_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 55 - 440
Target Start/End: Original strand, 40211222 - 40211607
Alignment:
| Q |
55 |
caaatgcatggcgtcaaaaacaatgttgttgggttgacggtaccttggtgtcgtgtcaatgaaagcaatggaggaaagggtggtgttccaaactgtgggt |
154 |
Q |
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| T |
40211222 |
caaatgcatggcgtcaaaaacaatgttgttgggttgacggtaccttggtgtcgtgtcaatgaaagcaatggaggaaagggtggtgttccaaactgtgggt |
40211321 |
T |
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| Q |
155 |
tgtgaaataatctcaacataccaaactgctacagagccaaattcaataccaaatttaacacactgaaccaaaatttaaaacaaaaagacaaagtgtgggt |
254 |
Q |
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| T |
40211322 |
tgtgaaataatctcaacataccaaactgctacagagccaaattcaataccaaatttaacacactgaaccaaaatttaaaacaaaaagacaaagtgtgggt |
40211421 |
T |
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| Q |
255 |
tggagaaacccctgatatttaaggcaaatgtatgacacatttaaagatctcatagcatgagtacaaatttcatcttaaaagtcacattcaattcttttaa |
354 |
Q |
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| T |
40211422 |
tggagaaacccctgatatttaaggcaaatgtatgacacatttaaagatctcatagcatgagtacaaatttcatcttaaaagtcacattcaattcttttaa |
40211521 |
T |
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| Q |
355 |
ggtcaaaaatttgtttcttttactacaaaattgctatactttgtagttaaaaggtcaatgtaggtggtcaaatgaaattaccatcc |
440 |
Q |
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| T |
40211522 |
ggtcaaaaatttgtttcttttactacaaaattgctatactttgtagttaaaaggtcaatgcaggtggtcaaatgaaattaccatcc |
40211607 |
T |
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