View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8762_low_1 (Length: 966)
Name: NF8762_low_1
Description: NF8762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8762_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 444 - 948
Target Start/End: Original strand, 43984235 - 43984740
Alignment:
| Q |
444 |
aaaccccaataaacttccacatcagtgcacactaaaattccacccgcagcagcaaagaaatgaccaaaattagtaannnnnnn-gcaccgagagctataa |
542 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43984235 |
aaaccccaataaacttccacatcagtgcacactaaaattccacccgcagcagcaaagaaatgaccaaaattagtaattttttttgcaccgagagctataa |
43984334 |
T |
|
| Q |
543 |
taaactatgaagtatggcttaacttacaatacttgtgagtcatgctaattagctccaaacacttgattagcacacaagtatacacatgcatgatagtact |
642 |
Q |
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| T |
43984335 |
taaactatgaagtatggcttaacttacaatacttgtgagtcatgctaattagctccaaacacttgattagcacacaagtatacacatgcatgatagtact |
43984434 |
T |
|
| Q |
643 |
gctacaatatatgcaacagagttttaccaaatgaactcaattgagttttcccaatgatcagaaacttccaaccaacttagaattctatacgatacttaga |
742 |
Q |
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| T |
43984435 |
gttacaatatatgcaacagagttttaccaaatgaactcaattgagttttcccaatgatcagaaacttgcaaccaacttagaattctatacgatacttaga |
43984534 |
T |
|
| Q |
743 |
tgttcaatcaatgccacaccatttccacatagaattggaacataatttaacactcctcttttaaataaattcgcttttgtataaatcctatttttaaata |
842 |
Q |
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| T |
43984535 |
tgttcaatcaatgccacaccatttccacatagaattggaacataatttaacactcctcttttaaataaattcgcttttgtataaatcctatttttaaata |
43984634 |
T |
|
| Q |
843 |
gtctcaacaccatcttgaacacattacacatgcattcaaaggaactaaactttgttaatttgggaaaatatcaaaataaaacaaaaagagaacttgaagt |
942 |
Q |
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| T |
43984635 |
gtctcaacatcatcttgaacacattacacatgcattcaaaggaactaaactttgttaatttgggaaaatatcaaaataaaacaaaaagagaacttgaagt |
43984734 |
T |
|
| Q |
943 |
aatcta |
948 |
Q |
| |
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|||||| |
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| T |
43984735 |
aatcta |
43984740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 35 - 284
Target Start/End: Original strand, 43983859 - 43984108
Alignment:
| Q |
35 |
tacaatccttcaattgatccaaaataaaatgacttttattaaacataaacaatgccaaatacaaaagtataattaatccaagtaataagagatttgagct |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
43983859 |
tacaatccttcaattgatccaaaataaaatgacttttattaaacataaacaatgccaaatacaaaagtataattgatccaagtaataagagatttaagct |
43983958 |
T |
|
| Q |
135 |
ccttaaacctaaggttcagagtttaattattgactctcacatatttcccaacgaaattaattactgctaagcggtgaaaatttcttaccaatatcgtgct |
234 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43983959 |
ccttaaacataaggttcagagtttaattattgactctcacatatttcccaacgaaattaattactgctaagcggtgaaaatttcgtaccaatatcgtgct |
43984058 |
T |
|
| Q |
235 |
aaaccaaaaaagatgtagcaaaatcagacacggcatcttatgcagatatc |
284 |
Q |
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| T |
43984059 |
aaaccaaaaaagatgtagcaaaatcagacacggcatcttatgcagatatc |
43984108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 352 - 399
Target Start/End: Original strand, 43984176 - 43984223
Alignment:
| Q |
352 |
gcacaacaactctcaaccaacagctttcaaatatcctacatttctcca |
399 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43984176 |
gcacaacaactctcaaccaacagctctcaaatatcctacatttctcca |
43984223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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