View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8762_low_10 (Length: 360)

Name: NF8762_low_10
Description: NF8762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8762_low_10
NF8762_low_10
[»] chr1 (2 HSPs)
chr1 (3-344)||(38568405-38568746)
chr1 (77-311)||(38527178-38527409)
[»] chr4 (5 HSPs)
chr4 (80-263)||(51197930-51198113)
chr4 (80-222)||(51144316-51144458)
chr4 (76-262)||(51211457-51211643)
chr4 (80-222)||(29938485-29938627)
chr4 (80-222)||(51155456-51155598)
[»] chr2 (3 HSPs)
chr2 (80-251)||(5764127-5764298)
chr2 (80-251)||(5833530-5833701)
chr2 (91-251)||(5821051-5821211)
[»] chr3 (1 HSPs)
chr3 (80-140)||(49738535-49738595)
[»] chr6 (1 HSPs)
chr6 (80-251)||(29331233-29331404)


Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 3 - 344
Target Start/End: Original strand, 38568405 - 38568746
Alignment:
Q  3 gtgtccgtgctcgtggttcatagattcaaagtaaccatttactccaaaatcatattttacattcaactctaaaattcataccttctcacccatggcatct 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38568405 gtgtccgtgctcgtggttcatagattcaaagtaaccatttactccaaaatcatattttacattcaactctaaaattcataccttctcacccatggcatct 38568504  T
Q  103 tgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtctgtttctttatcaaagaaagtaacatcttgtcttaatattgttttcaaat 202  Q
    |||||||||||||||||||| |||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38568505 tgaataagaacagtatcacctgacattctccctataacttctcctgtgtttgtttctttatcaaagaaagtaacatcttgtcttaatattgttttcaaat 38568604  T
Q  203 acaatcctcttattcttgcagcttgtctttctcctgtaaccatccaacaactcacctctgaaaatacaaaaacaatttctcacaagtttagtgtcttttc 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38568605 acaatcctcttattcttgcagcttgtctttctcctgtaaccatccaacaactcacctctgaaaatacaaaaacaatttctcacaagtttagtgtcttttc 38568704  T
Q  303 ttcatatacnnnnnnnttcatcatcttaattaatacaaatat 344  Q
    |||||||||       ||||||||||||||||||||||||||    
T  38568705 ttcatatacaaaaaaattcatcatcttaattaatacaaatat 38568746  T

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Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 77 - 311
Target Start/End: Original strand, 38527178 - 38527409
Alignment:
Q  77 ttcataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtctgtttctttatcaaagaaagtaac 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38527178 ttcataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtttgtttctttatcaaagaaagtaac 38527277  T
Q  177 atcttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtctttctcctgtaaccatccaacaactcacctctgaaaatacaaaaaca 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||    
T  38527278 atcttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtctttctcctgttaccatccaacaactcacctctgaaaatac--aaaca 38527375  T
Q  277 atttctcacaagtttagtgtcttttcttcatatac 311  Q
    | || ||| ||||||||||||||||||||||||||    
T  38527376 a-ttatcataagtttagtgtcttttcttcatatac 38527409  T

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Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 80 - 263
Target Start/End: Complemental strand, 51198113 - 51197930
Alignment:
Q  80 ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtctgtttctttatcaaagaaagtaacatc 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || |  ||||| |||||||||||| | |||||    
T  51198113 ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttccaacaacctctccagtattagtttccttatcaaagaaactcacatc 51198014  T
Q  180 ttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtctttctcctgtaaccatccaacaactcacctctga 263  Q
    ||| || || |||||||  |  || || | ||| ||||||||||| ||||| || || |||| |||||| ||| ||| ||||||    
T  51198013 ttgcctcaaaattgtttggaggtataagcttctgattcttgcagcctgtctctcaccggtaatcatccagcaagtcaactctga 51197930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 80 - 222
Target Start/End: Complemental strand, 51144458 - 51144316
Alignment:
Q  80 ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtctgtttctttatcaaagaaagtaacatc 179  Q
    |||||||||||||||||||||| | |||||||||||||||||| ||||||||||| ||||| ||||| || |  ||||| |||||||||||| | |||||    
T  51144458 ataccttctcacccatggcatccttaataagaacagtatcacctgacattcttccaacaacctctcccgtattagtttccttatcaaagaaactcacatc 51144359  T
Q  180 ttgtcttaatattgttttcaaatacaatcctcttattcttgca 222  Q
    ||| || || |||||||| | ||| || ||||| |||||||||    
T  51144358 ttgcctcaaaattgttttaagatataaccctctaattcttgca 51144316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 76 - 262
Target Start/End: Complemental strand, 51211643 - 51211457
Alignment:
Q  76 attcataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtctgtttctttatcaaagaaagtaa 175  Q
    ||||||||||| || |||||||| |||||||||||||| |||||||| ||||||||||| ||||| || ||  | | |||||| || ||||||||| | |    
T  51211643 attcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactga 51211544  T
Q  176 catcttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtctttctcctgtaaccatccaacaactcacctctg 262  Q
     |||||| ||||| |||| ||| |  || ||| | |||||||||||||| ||||| || ||||| | ||||||||||  ||||||||    
T  51211543 tatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctcccctgtgatcatccaacaagacacctctg 51211457  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 80 - 222
Target Start/End: Original strand, 29938485 - 29938627
Alignment:
Q  80 ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtctgtttctttatcaaagaaagtaacatc 179  Q
    |||||||||| ||||||||||||| |||||||||||| ||||| | ||| ||||| ||||| ||||| ||||  |||||||||||||| ||  | |||||    
T  29938485 ataccttctcccccatggcatctttaataagaacagtgtcacctgccatccttccaacaacctctccagtgttagtttctttatcaaaaaagctcacatc 29938584  T
Q  180 ttgtcttaatattgttttcaaatacaatcctcttattcttgca 222  Q
    ||| || || |||||||| |  || || ||||| |||||||||    
T  29938585 ttgcctcaaaattgttttaaggtataagcctctaattcttgca 29938627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 222
Target Start/End: Complemental strand, 51155598 - 51155456
Alignment:
Q  80 ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtctgtttctttatcaaagaaagtaacatc 179  Q
    |||||||||| ||||||||||||| ||| ||||  |||||||| ||||| ||||| ||||| ||||| || |  ||||| |||||||||||  | |||||    
T  51155598 ataccttctcccccatggcatctttaattagaaatgtatcacctgacatccttccaacaacctctccagtattagtttccttatcaaagaagctcacatc 51155499  T
Q  180 ttgtcttaatattgttttcaaatacaatcctcttattcttgca 222  Q
    ||| || || |||||||| |  || || ||||| |||||||||    
T  51155498 ttgcctcaaaattgttttaaggtataaccctctaattcttgca 51155456  T

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Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 80 - 251
Target Start/End: Complemental strand, 5764298 - 5764127
Alignment:
Q  80 ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtctgtttctttatcaaagaaagtaacatc 179  Q
    ||||||| || ||||||||||||||||| ||||  || |||||||||||||| || |  ||||||||||||| ||||||  | |||||||| | || |||    
T  5764298 ataccttttctcccatggcatcttgaatgagaattgtgtcaccagacattctaccaattacttctcctgtgtttgtttcagtgtcaaagaatgcaatatc 5764199  T
Q  180 ttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtctttctcctgtaaccatccaaca 251  Q
     ||  ||||||| |||||||| ||||| |  |  || ||||||| ||||||||||||||| |||||||||||    
T  5764198 ctgctttaatatggttttcaagtacaaactacgaatccttgcagattgtctttctcctgtcaccatccaaca 5764127  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 251
Target Start/End: Original strand, 5833530 - 5833701
Alignment:
Q  80 ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtctgtttctttatcaaagaaagtaacatc 179  Q
    ||||||| || ||||| || |||||||| ||||  || |||||||||||||| || |  || |||||||||| ||||||  |||||||||| | || |||    
T  5833530 ataccttttctcccatagcctcttgaatgagaattgtgtcaccagacattctaccaattacctctcctgtgtttgtttcagtatcaaagaatgcaatatc 5833629  T
Q  180 ttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtctttctcctgtaaccatccaaca 251  Q
     |||  |||||| |||||||| ||||| |  |  || ||||||||||||||||||||||| |||||||||||    
T  5833630 ctgttgtaatatggttttcaagtacaagctacgaatccttgcagcttgtctttctcctgttaccatccaaca 5833701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 251
Target Start/End: Complemental strand, 5821211 - 5821051
Alignment:
Q  91 cccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtctgtttctttatcaaagaaagtaacatcttgtcttaata 190  Q
    ||||||||||||||||| ||||  |||||||||||||||||||| | ||| |||||  ||  || |||  | |||||| | | || ||||||  ||| ||    
T  5821211 cccatggcatcttgaatgagaatggtatcaccagacattcttccaataacctctccactggttgcttcagtgtcaaagtaggaaatatcttgctttagta 5821112  T
Q  191 ttgttttcaaatacaatcctcttattcttgcagcttgtctttctcctgtaaccatccaaca 251  Q
    | |||||||| ||||| || |  || ||||||||||||||||||||||| |||||||||||    
T  5821111 tagttttcaagtacaagccacgaatccttgcagcttgtctttctcctgtcaccatccaaca 5821051  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 49738535 - 49738595
Alignment:
Q  80 ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaac 140  Q
    |||||||||| ||||||||||||||||||||||| || ||||| || |||||||| |||||    
T  49738535 ataccttctctcccatggcatcttgaataagaactgtgtcacctgatattcttccaacaac 49738595  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 251
Target Start/End: Original strand, 29331233 - 29331404
Alignment:
Q  80 ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtctgtttctttatcaaagaaagtaacatc 179  Q
    ||||||| || ||||| || |||||||| ||||  || |||||||||||||| |  |  || |||||||||| ||||||  | |||||||| | || |||    
T  29331233 ataccttttctcccatagcttcttgaatgagaattgtgtcaccagacattctactaattacctctcctgtgtttgtttcagtgtcaaagaatgcaatatc 29331332  T
Q  180 ttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtctttctcctgtaaccatccaaca 251  Q
     ||  ||||||| |||||||| ||||| |  |  || || |||| ||||||||||||||| |||||||||||    
T  29331333 ctgctttaatatggttttcaagtacaaactacgaatcctcgcagattgtctttctcctgtcaccatccaaca 29331404  T

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