View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8762_low_14 (Length: 250)
Name: NF8762_low_14
Description: NF8762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8762_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 9e-85; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 53 - 235
Target Start/End: Complemental strand, 11295167 - 11294985
Alignment:
| Q |
53 |
ttttatttttagtgttcatagaaatataacacacacaaacactatatacatatgtgtgtacaccattatttgaagcacaataatgccattaaatatcact |
152 |
Q |
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| T |
11295167 |
ttttatttttagtgtttataaaaatataacaaacacaaacactatatacatatgtgtgtacaccattatttgaagcacaataatgccattaaatatcaat |
11295068 |
T |
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| Q |
153 |
gagcattgaaaaaatctatcatgcgatcataaacgtcttgtttagctttgacacccaaaataaaatcagcatgagcataattt |
235 |
Q |
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| T |
11295067 |
gagcattgaaaaaatctatcatgggatcataaacgtcttgtttagctttgacacctaaaataaaatcagcatgagcataattt |
11294985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 53 - 235
Target Start/End: Complemental strand, 11301117 - 11300939
Alignment:
| Q |
53 |
ttttatttttagtgttcatagaaatataacacacacaaacactatatacatatgtgtgtacaccattatttgaagcacaataatgccattaaatatcact |
152 |
Q |
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| T |
11301117 |
ttttatttttagtgtggatagaaatataacacaca--aacattatata--tatgtgtgtgcaccattatttgaagcataataatgccattaaatatcact |
11301022 |
T |
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| Q |
153 |
gagcattgaaaaaatctatcatgcgatcataaacgtcttgtttagctttgacacccaaaataaaatcagcatgagcataattt |
235 |
Q |
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| T |
11301021 |
gagcattgaaaaaatctaccatgggatcataaacgtcttgtttagttttgacacccaaagtaaaatcagtatgagcataattt |
11300939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 11295249 - 11295200
Alignment:
| Q |
1 |
gttgtgtcgaatgaatggtatgaatagacggggataagattaggattgac |
50 |
Q |
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| T |
11295249 |
gttgtgtcgaatgaatggtatgaatagacggggataagattaggattgac |
11295200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 118 - 235
Target Start/End: Complemental strand, 30912328 - 30912210
Alignment:
| Q |
118 |
ttatttgaagcacaa-taatgccattaaatatcactgagcattgaaaaaatctatcatgcgatcataaacgtcttgtttagctttgacacccaaaataaa |
216 |
Q |
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||||||||||||||| | ||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||| || |||||| |
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| T |
30912328 |
ttatttgaagcacaaatgatgcctgtaaatatcactgtttgttgaaaaaatctatcatgggatcataaacgtcttgtttagcggtgacactcataataaa |
30912229 |
T |
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| Q |
217 |
atcagcatgagcataattt |
235 |
Q |
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| T |
30912228 |
atcagcatgtgcataattt |
30912210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 30905827 - 30905746
Alignment:
| Q |
152 |
tgagcattgaaaaaatctatcatgcgatcataaacgtcttgtttagctttgacacccaaaataaaatcagcatgagcataat |
233 |
Q |
| |
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||||| ||||||||| |||||||| |||||||||| |||||||||| |||| ||| || |||||||||||| ||||||| |
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| T |
30905827 |
tgagcgttgaaaaaagctatcatgggatcataaaccacttgtttagcactgacggccataacaaaatcagcatgtgcataat |
30905746 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 233
Target Start/End: Original strand, 36711480 - 36711566
Alignment:
| Q |
147 |
atcactgagcattgaaaaaatctatcatgcgatcataaacgtcttgtttagctttgacacccaaaataaaatcagcatgagcataat |
233 |
Q |
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|||| ||||| ||||||||| |||||||| ||||||||||| |||||||||| || ||||||| ||||||||| ||| ||||||| |
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| T |
36711480 |
atcaatgagcgttgaaaaaagctatcatgggatcataaacgacttgtttagcattatcacccaatataaaatcaagatgtgcataat |
36711566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 36704344 - 36704419
Alignment:
| Q |
158 |
ttgaaaaaatctatcatgcgatcataaacgtcttgtttagctttgacacccaaaataaaatcagcatgagcataat |
233 |
Q |
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||||||||| |||| ||| ||||||||||| |||||||||| ||| ||||| |||||||||||||| ||||||| |
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| T |
36704344 |
ttgaaaaaagctattatgggatcataaacgacttgtttagcattgtcacccgctataaaatcagcatgtgcataat |
36704419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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