View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8762_low_2 (Length: 604)
Name: NF8762_low_2
Description: NF8762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8762_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 265 - 589
Target Start/End: Complemental strand, 20614160 - 20613838
Alignment:
| Q |
265 |
cagcttccacatgtgcaggataattattctagtataggtgtagcataacaatatccttgtaacaaacttataaagttagttttagttatataccttacag |
364 |
Q |
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| T |
20614160 |
cagcttccacatgtgcaggataattattc-agtataggtgtagcataacactatccttgtaacaaacttataaagttagttttagttatatagcttacag |
20614062 |
T |
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| Q |
365 |
attaaagtctcaattcaatgtaatattcaacaatcagagaataaaaaataagctttaaagcattgtgaataatctcttacactctctctgttatggaata |
464 |
Q |
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| T |
20614061 |
attaaaaactcaattcaatgtaatattcaacgatcagaaaataaaaaacaagctttaaagc-ttgtgaataatctcttacactctctctgttatggaaca |
20613963 |
T |
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| Q |
465 |
taaatctcaatcccaattctaccctagttcaataacatgtatatgaaatcccatagattcctcgattatgatcttctctagtgcaaaccgctactccagt |
564 |
Q |
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| T |
20613962 |
taaatctcaatcccaattctaccctagttcaataacgtgtatatgaaatcccatagattcctcgattatgatcttctctagtgcaaactgctactccaat |
20613863 |
T |
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| Q |
565 |
agttgcaacaaccgcgcctctgcca |
589 |
Q |
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| T |
20613862 |
agttgcaacaaccgcgcctctgcca |
20613838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 20614471 - 20614214
Alignment:
| Q |
1 |
gaaagaataaacacaccttattcatcatgaatatgcatacctgttttacgccgctcatccgagaaagaggcatcaacattaaacattacattgtactata |
100 |
Q |
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| T |
20614471 |
gaaagaataaaaacaccttattcatcacgaatacacatgcctgttttatgcagctcatccgagaaagaggcatcaacattaa-cattacattgtactata |
20614373 |
T |
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| Q |
101 |
tcttgagttcgctgccatgaaataggaagcacgttgttgcttccccataacacttgcagccgaattgatggaatccgcggttgcattatgtacaaccatt |
200 |
Q |
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| T |
20614372 |
tcttgagttcgctgccatgaaataggaagcatgttgttgcttccccataacacttgcagccgaattgatggaattcacggttgcattatgtacaaccatt |
20614273 |
T |
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| Q |
201 |
ctacggtggtatgcttcaacagaagaagccatgtaatcctctatgagatgtcaagctct |
259 |
Q |
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| T |
20614272 |
ctactgcggtatgcttcaacagaagaagccatgtaatcctctatgagatgttaagctct |
20614214 |
T |
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