View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8762_low_4 (Length: 538)
Name: NF8762_low_4
Description: NF8762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8762_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 19 - 528
Target Start/End: Original strand, 9475443 - 9475952
Alignment:
| Q |
19 |
cattcctcgttatttcttaaccaaatccaatttcacaagttattacagtaatagcagccgcgaggatccatacagatttgattatgcatcttggttcgaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9475443 |
cattcctcgttatttcttaaccaaatccaatttcacaagttattacagtaatagcaaacgcgaggatccatacggatttgattatgcatcttggttcgaa |
9475542 |
T |
|
| Q |
119 |
tacataatttacttgaactgtagcaagccagtgaaggacgatcctgattatgtggacacagctccgtgcagagtgaactgggactccaactccactgatc |
218 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9475543 |
tacataacttacttgaactgtagcaagccagtgaaggacgatcctgattatgtggacacagctccgtgcagagtgaactgggactccaactccactgatc |
9475642 |
T |
|
| Q |
219 |
atgtttatgtgatcgctcggcgcataagtgctcgaaaattaaatattgattgccacgtgaagcttgttgctatgtcatcagctcctgcttttatctctca |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9475643 |
atgtttatgtgatcgctcggcgcataagtgctcgaaaattaaatattgattgccacgtgaagcttgttgctatgtcagcagctcctgcttttatctctcg |
9475742 |
T |
|
| Q |
319 |
gagtgatctacaccatttttcttacgcggaaattcacggaatgctaagctatggatttgaactttcgtggatgacacgtgcttgtgaagatttttgtgac |
418 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9475743 |
gagtgatcaacaccatttttcttacgcggaaattcacggaatgctaagctatggatttgaaatttcgtggattacacgtgcttgtgaagatttttgtgac |
9475842 |
T |
|
| Q |
419 |
ttaaaacaacaagactgctacatgggtctaattacaaccggatctttgatatgtctaagtcgtgcttgcactgctccattcggatacaacatcttatgtg |
518 |
Q |
| |
|
||||||| ||||||||||| ||||| || ||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9475843 |
ttaaaacgacaagactgctccatggatcgaattaacaccggacctttgatatgtctaagtcgtgtttgcactgctccattcggatacaacatcttatgtg |
9475942 |
T |
|
| Q |
519 |
gtaagtataa |
528 |
Q |
| |
|
|||||||||| |
|
|
| T |
9475943 |
gtaagtataa |
9475952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 362 - 418
Target Start/End: Original strand, 9307326 - 9307382
Alignment:
| Q |
362 |
ctaagctatggatttgaactttcgtggatgacacgtgcttgtgaagatttttgtgac |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| |
|
|
| T |
9307326 |
ctaagctatggatttgaactttcgtggatgagacgtggttgtgaagatcattgtgac |
9307382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 9359254 - 9359214
Alignment:
| Q |
19 |
cattcctcgttatttcttaaccaaatccaatttcacaagtt |
59 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
9359254 |
cattcctccatatttcttaactaaatccaatttcacaagtt |
9359214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 254 - 442
Target Start/End: Complemental strand, 9168179 - 9167991
Alignment:
| Q |
254 |
aaattaaatattgattgccacgtgaagcttgttgctatgtcatcagctcctgcttttatctctcagagtgatctacaccatttttcttacgcggaaattc |
353 |
Q |
| |
|
||||| ||| ||| ||||| ||||||||||||| |||||||||||||| ||||||||||| ||| ||| | || | |||||| || | |||||||| |
|
|
| T |
9168179 |
aaattgaatgttggttgccgcgtgaagcttgttactatgtcatcagctttagcttttatctccaagaaagattttcaacctttttcatatgtggaaattc |
9168080 |
T |
|
| Q |
354 |
acggaatgctaagctatggatttgaactttcgtggatgacacgtgcttgtgaagatttttgtgacttaaaacaacaagactgctacatg |
442 |
Q |
| |
|
| || | ||||||||||||||||||||||||||||| | || |||||||||||| ||||||| | || |||||| ||||||||||| |
|
|
| T |
9168079 |
atcgatttctaagctatggatttgaactttcgtggataagacaaccttgtgaagattcttgtgacatgaaccaacaaaactgctacatg |
9167991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 9168411 - 9168363
Alignment:
| Q |
19 |
cattcctcgttatttcttaaccaaatccaatttcacaagttattacagt |
67 |
Q |
| |
|
||||||||| |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
9168411 |
cattcctcgctatttcttaaccgcaaccaatttcacaagttattacagt |
9168363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University