View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8762_low_6 (Length: 440)
Name: NF8762_low_6
Description: NF8762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8762_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 6 - 381
Target Start/End: Original strand, 3569296 - 3569669
Alignment:
| Q |
6 |
tttggtggtcacatgaaatgaaacacatctatgatgtccctgtaaactattgtttaggtaattttttcttcatatctttctctttgattttcttgcttat |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3569296 |
tttggtggtcacatgaaatgaaacacatctatg---tccctgtaaactattgtttaggtaattttttcttcatatctttctctttgattttcttgctttt |
3569392 |
T |
|
| Q |
106 |
aatggtcatgaaatatacatgacaacaacacaaacatattgtaatttttaatggaaataaaacnnnnnnnn-catctcaagttgtgttgtgtgactgata |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3569393 |
aatggtcatgaaatatacatgacaacaacacaaacatattgtaatttttaatggaaataaaacattttttttcatctcaagttgtgttgtgtgactgata |
3569492 |
T |
|
| Q |
205 |
cattnnnnnnntcagatgctcattaacaatacttgtccaaactcattggtagagttcgctagaagacaagctaatgtagtggtccataatttggctgagt |
304 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3569493 |
cattaaaaaaatcagatgctcattaacaatacttgtccaaactcattggtagagttcgctagaagacaagctaatgtagtggtccataatttggctgagt |
3569592 |
T |
|
| Q |
305 |
gactacatatacagctaatcctcaagtttttgatgctgttccacattgttttcatgatattatccttaatgaaatga |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3569593 |
gactacatatacagctaatcctcaagtttttgatgttgttccacattgttttcatgatattatccttaatgaaatga |
3569669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University