View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8762_low_9 (Length: 402)
Name: NF8762_low_9
Description: NF8762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8762_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Original strand, 43971914 - 43972292
Alignment:
| Q |
19 |
tgagacatataaatttgaaaaagaaaggaagaagattgatgaaacacattaaatatacatgtagggtcgtacaagttgccttcaatgcatttccaacctc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43971914 |
tgagacatataaatttgaaaaagaaaggaagaagattgatgaaacacattaaatatacatgtagggtcgtacaagttgccttcaatgcatttccaacctc |
43972013 |
T |
|
| Q |
119 |
cccaccttactcattcactcatagatcttcctttcaaatcttactactactattttatttatatactcctgctttatcgttccttacacaccaaaaacta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43972014 |
cccaccttactcattcactcatagatcttcctttcaaatcttactactactattttatttatatactcctgctttatcgttccttacacaccaaaaacta |
43972113 |
T |
|
| Q |
219 |
ttctactaaatatttattatacttcttcaaagagtacttactatatgggaaaccagtcaaagacaagtgtggatggagttcacagcgatgtaaaggtttt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43972114 |
ttctactaaatatttattatacttcttcaaagagtacttactatatgggaaaccagtcaaagacaagtgtggatggagttcacagcgatgtaaaggtttt |
43972213 |
T |
|
| Q |
319 |
ggagatgaaaactagaaggagtaatgttttagatgtgttgcttagggttcttggtttcttgcttactctctctgctact |
397 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43972214 |
ggagatgaaaactaaaaggagtaatgttttagatgtgttgcttagggttcttggtttcttgcttactctcactgctact |
43972292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 19257418 - 19257454
Alignment:
| Q |
33 |
ttgaaaaagaaaggaagaagattgatgaaacacatta |
69 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
19257418 |
ttgaaaaagaaaggaaggagattgatgaaacaaatta |
19257454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University