View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8763_high_2 (Length: 399)

Name: NF8763_high_2
Description: NF8763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8763_high_2
NF8763_high_2
[»] chr4 (10 HSPs)
chr4 (16-387)||(11548631-11549016)
chr4 (47-387)||(11444123-11444477)
chr4 (164-387)||(11441377-11441601)
chr4 (282-387)||(11508289-11508394)
chr4 (47-162)||(11441211-11441326)
chr4 (255-384)||(11524507-11524636)
chr4 (276-384)||(11487833-11487941)
chr4 (284-384)||(11467266-11467366)
chr4 (283-380)||(34785114-34785211)
chr4 (288-380)||(34776948-34777040)


Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 387
Target Start/End: Complemental strand, 11549016 - 11548631
Alignment:
Q  16 caaaatgcatctgggaaaatactcaaaataaacaagaagcatatacgaaaagaagtacaaattgagtctctgaagattggtaaagggaagaattttggaa 115  Q
    ||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11549016 caaaatgcagctaggaaaatactcaaaataaacaagaagcatctacgaaaagaagtacaaattgagtctctgaagattggtaaagggaggaattttggaa 11548917  T
Q  116 ccaaatttaacatcttcaaagaaattgactggctaagatcatacatgc--------------atgaataccaaacaacatagcaccttaattaacattat 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||    
T  11548916 ccaaatttaacatcttcaaagaaattgactggctaagatcatacatggtaagaaagttgcatatgaataccaaacaacatagcaccttaattaacattat 11548817  T
Q  202 tcagttgtgactatcaatttgacttatgagtacaaacttattgaattttaatcataacttaagtgaaacaagttctaatcaaaattaaggataaacttcg 301  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11548816 tcagttgtgactatcaatttgacttttgagtacaaacttattgaattttaatcataacttaagtgaaacaagttctaatcaaaattaaggataaacttcg 11548717  T
Q  302 atgatagatttgaagccgcatataggtgtaatcttatagctgctgaagcctgcgtcgaatatgagtttctcccattctttcttctc 387  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  11548716 atgatagacttgaagccgcatataggagtaatcttatagctgctgaagcctgcgtcgagtataagtttctcccattctttcttctc 11548631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 47 - 387
Target Start/End: Original strand, 11444123 - 11444477
Alignment:
Q  47 acaagaagcatatacgaaaagaagtacaaattgagtctctgaagattggtaaagggaagaattttggaaccaaatttaacatcttcaaagaaattgactg 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  11444123 acaagaagcatatacgaaaagaagtacaaattgagtctctgaagattggtaaaaggaggaattttggaaccaaatttaacatcttcaaagaaattgactg 11444222  T
Q  147 gctaagatcatacatgc--------------atgaataccaaacaacatagcaccttaattaacattattcagttgtgactatcaatttgacttatgagt 232  Q
    ||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11444223 gctaagatcatacatggtaagaaagttgcatatgaataccaaacaacatagcaccttaattaacattattcagttgtgactatcaatttgacttttgagt 11444322  T
Q  233 acaaacttattgaattttaatcataacttaagtgaaacaagttctaatcaaaattaaggataaacttcgatgatagatttgaagccgcatataggtgtaa 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  11444323 acaaacttattgaattttaatcataacttaagtgaaacaagttctaatcaaaattaaggataaacttcgatgatagacttgaagccgcatataggagtaa 11444422  T
Q  333 tcttatagctgctgaagcctgcgtcgaatatgagtttctcccattctttcttctc 387  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  11444423 tcttatagctgctgaagcctgcgtcgagtataagtttctcccattctttcttctc 11444477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 164 - 387
Target Start/End: Original strand, 11441377 - 11441601
Alignment:
Q  164 atgaataccaaacaacatagcaccttaattaacattattcagttgtgactatcaatttgacttatgagtacaaacttattgaattttaatcataacttaa 263  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11441377 atgaataccatacaacatagcaccttaattaacagtattcagttgtgactatcaatttgacttttgagtacaaacttattgaattttaatcataacttaa 11441476  T
Q  264 gtgaaacaagttctaatc-aaaattaaggataaacttcgatgatagatttgaagccgcatataggtgtaatcttatagctgctgaagcctgcgtcgaata 362  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11441477 gtgaaacaagttctaatcaaaaattaaggataaacttcgatgatagatttgaagccgcatataggtgtaatcttatagctgctgaagcctgcgtcgaata 11441576  T
Q  363 tgagtttctcccattctttcttctc 387  Q
    |||||||||||||||||||||||||    
T  11441577 tgagtttctcccattctttcttctc 11441601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 282 - 387
Target Start/End: Complemental strand, 11508394 - 11508289
Alignment:
Q  282 aaaattaaggataaacttcgatgatagatttgaagccgcatataggtgtaatcttatagctgctgaagcctgcgtcgaatatgagtttctcccattcttt 381  Q
    ||||||| ||||| |||||||||| ||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11508394 aaaattatggatatacttcgatgagagacttgaaaccgcatataggtgtaatcttatagctgctgaaacctgcgtcgaatatgagtttctcccattcttt 11508295  T
Q  382 cttctc 387  Q
    ||||||    
T  11508294 cttctc 11508289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 47 - 162
Target Start/End: Original strand, 11441211 - 11441326
Alignment:
Q  47 acaagaagcatatacgaaaagaagtacaaattgagtctctgaagattggtaaagggaagaattttggaaccaaatttaacatcttcaaagaaattgactg 146  Q
    ||||||||||| || |||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||| ||| |||||| ||||||||||| ||    
T  11441211 acaagaagcatctaggaaaagaagtacaaattgggtctctgaagattggtaaaggcatgaattttggaaccaaacttatcatctttaaagaaattgattg 11441310  T
Q  147 gctaagatcatacatg 162  Q
    ||||||||||||||||    
T  11441311 gctaagatcatacatg 11441326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 255 - 384
Target Start/End: Complemental strand, 11524636 - 11524507
Alignment:
Q  255 ataacttaagtgaaacaagttctaatcaaaattaaggataaacttcgatgatagatttgaagccgcatataggtgtaatcttatagctgctgaagcctgc 354  Q
    ||||||||  || ||||| | ||||| | ||||||||||||||||| || | ||| |||||||| ||||| || |||||||| |||||||||||||| ||    
T  11524636 ataacttatttgcaacaactactaattagaattaaggataaacttctataagagacttgaagccacatattggagtaatcttgtagctgctgaagccagc 11524537  T
Q  355 gtcgaatatgagtttctcccattctttctt 384  Q
    |||  | |||||||||| ||||||||||||    
T  11524536 gtcatagatgagtttcttccattctttctt 11524507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 276 - 384
Target Start/End: Complemental strand, 11487941 - 11487833
Alignment:
Q  276 ctaatcaaaattaaggataaacttcgatgatagatttgaagccgcatataggtgtaatcttatagctgctgaagcctgcgtcgaatatgagtttctccca 375  Q
    ||||| ||||||| ||||||||||| ||||  || |||||||| ||||| || |||||||| |||||||||||||| |||||  | |||||||||| |||    
T  11487941 ctaattaaaattagggataaacttctatgagtgacttgaagccacatattggagtaatcttgtagctgctgaagccagcgtcatagatgagtttcttcca 11487842  T
Q  376 ttctttctt 384  Q
    |||||||||    
T  11487841 ttctttctt 11487833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 384
Target Start/End: Original strand, 11467266 - 11467366
Alignment:
Q  284 aattaaggataaacttcgatgatagatttgaagccgcatataggtgtaatcttatagctgctgaagcctgcgtcgaatatgagtttctcccattctttct 383  Q
    ||||||||||||||||| || | ||| |||||||| ||||| || |||||||| ||||| ||||| ||||| ||  |||||||||||| |||||||||||    
T  11467266 aattaaggataaacttctataagagacttgaagccacatattggagtaatcttgtagctactgaaacctgcatcatatatgagtttcttccattctttct 11467365  T
Q  384 t 384  Q
    |    
T  11467366 t 11467366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 380
Target Start/End: Complemental strand, 34785211 - 34785114
Alignment:
Q  283 aaattaaggataaacttcgatgatagatttgaagccgcatataggtgtaatcttatagctgctgaagcctgcgtcgaatatgagtttctcccattctt 380  Q
    |||||||||||||||||| | || ||| ||||||||  | || || ||||| || |||||||| || ||||| ||  |||||||||| ||||||||||    
T  34785211 aaattaaggataaacttcaacgagagacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattctt 34785114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 380
Target Start/End: Complemental strand, 34777040 - 34776948
Alignment:
Q  288 aaggataaacttcgatgatagatttgaagccgcatataggtgtaatcttatagctgctgaagcctgcgtcgaatatgagtttctcccattctt 380  Q
    ||||||||||||||||||  || ||||||||  | || || ||||| || |||||||| || ||||| ||  |||||||||| ||||||||||    
T  34777040 aaggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattctt 34776948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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