View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8763_high_3 (Length: 360)
Name: NF8763_high_3
Description: NF8763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8763_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 30 - 344
Target Start/End: Original strand, 40591909 - 40592219
Alignment:
| Q |
30 |
tcatagagtagatagatgaattcatatatatctcaaactgtaaagccatatacacagaattagaagttcctttttgttttgatgttcttgcatatcattt |
129 |
Q |
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| T |
40591909 |
tcatagagtagatagatgaattcattcatatata----tgtaaagccatagacacagaattagaagttcctttttgttttgatgttcttgcatatcattt |
40592004 |
T |
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| Q |
130 |
caatatgctttttaagttatggttttgttcttggcctaggcagcataaaaagtgactttctttagacattatgtcagtgtcatgagcacaatacaactcc |
229 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40592005 |
caatatgctttttaacttatggttttgttcttggcctaggcagcataaaaagtgactttctttagacattatgtcagtgtcatgagcacaatacaactcc |
40592104 |
T |
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| Q |
230 |
tcatcaggaacgaaagagagaattcaattgaaatgcgctaatttatgagaaagaacatggaatatctcctgtgattacagagcaataatgcagaaccttt |
329 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40592105 |
tcatcaggaacgaaagaaagaattcaattgaaatgcgctaatttatgagaaagaacatggaatatctcccgtgattacagagcaataatgcagaaccttt |
40592204 |
T |
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| Q |
330 |
gagggcctgcaacct |
344 |
Q |
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||||||||||||||| |
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| T |
40592205 |
gagggcctgcaacct |
40592219 |
T |
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