View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8763_high_7 (Length: 264)
Name: NF8763_high_7
Description: NF8763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8763_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 47540513 - 47540285
Alignment:
| Q |
18 |
tatacttgggggccacatgtactgtcaattatnnnnnnntctggacattattgttgtgaacttgcaatgtacatacttctattgattatgagtttcaact |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47540513 |
tatacttgggggccacatgtactgtcaattataaaaaaatctggacattattgttgtgaacttgcaatgtacatacttctattgattatgagtttcaact |
47540414 |
T |
|
| Q |
118 |
gtagatgctctgttaggatcttgcaattcaacggtggtagcggtagggtccacacagaattcaacaaacccacagctagtgcatcacatgtgtaacacca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47540413 |
gtagatgctctgttaggatcttgcaattcaacggtggtagcggtagggtccacacagaattcaacaaacccacagctagtgcatcacatgtgtaacacca |
47540314 |
T |
|
| Q |
218 |
caaatgaaaacaaatgtataagatggaga |
246 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
47540313 |
caaatgaaaacaaatgtataagatggaga |
47540285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 47546750 - 47546673
Alignment:
| Q |
114 |
aactgtagatgctctgttaggatcttgcaattcaacggtggtagcggtagggtccacacagaattcaacaaacccaca |
191 |
Q |
| |
|
|||||||| |||||||||||||| ||||| |||||||||||| | || ||||||||||||||||||||||| ||||| |
|
|
| T |
47546750 |
aactgtagcggctctgttaggatcatgcaagtcaacggtggtaccagtggggtccacacagaattcaacaaatccaca |
47546673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University