View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8763_low_3 (Length: 409)
Name: NF8763_low_3
Description: NF8763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8763_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 17 - 407
Target Start/End: Complemental strand, 42848784 - 42848394
Alignment:
| Q |
17 |
agttaaatgactctggtgtatccaaattcatgtagtcctcctaaaatatgagtcgaaaaaatcgtcaaacagaataatagtctttgaaatttacttctag |
116 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42848784 |
agttaaatgactccggtgtatccaaattcatgtagtcctcctaaaatatgagtcgaaaaaatcatcaaacagaataatagtctttgaaatttacttctat |
42848685 |
T |
|
| Q |
117 |
tatcataaatcttgagtagttaaaattaaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaatgagatcaagaaaaaac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42848684 |
tatcataaatcttgagtagttaaaattaaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaatgagatcaagaaaaaac |
42848585 |
T |
|
| Q |
217 |
catagtgagagaagcttttaacataccctcctccaagcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgttgatgcagttgc |
316 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42848584 |
catagtgagagaagcttttaacatgccctcctccaagcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgttgatgcagttgc |
42848485 |
T |
|
| Q |
317 |
attaagatcacaaagctggaaggtaaaatgtaaagtatttattattgctaatcgacaagaatgaaaaagaatatcatgatgtccatctcat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
42848484 |
attaagatcacaaagctggaaggtaaaatgtaaagtatttattattgctaatcgacaagaatgaaaaagaatatcatgatatacatctcat |
42848394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 144 - 396
Target Start/End: Complemental strand, 42855201 - 42854950
Alignment:
| Q |
144 |
aaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgagagaagcttttaacatacc |
243 |
Q |
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|||||||||||||| |||||||| ||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
42855201 |
aaaattaaaattaaagaagacttaaatccctcccaatagtgaaaa-aaaatgaaaatgagatccagaaaaaaccatagtgagagaagcttttaacatgcc |
42855103 |
T |
|
| Q |
244 |
ctcctccaagcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgttgatgcagttgcattaagatcacaaagctggaaggtaaa |
343 |
Q |
| |
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|||||||||| |||||||||||| ||||||||||||| |||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||| |||| |
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| T |
42855102 |
ctcctccaagtgttttgaaagattcttaatcctccttttctgcatttcattaattggctgctgatgccgttgcattaagatcacaaagctggaagttaaa |
42855003 |
T |
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| Q |
344 |
atgtaaagtatttattattgctaatcgacaagaatgaaaaagaatatcatgat |
396 |
Q |
| |
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||||||| ||| ||||||||| |||||||||||||| |||||||| |||||| |
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| T |
42855002 |
atgtaaaatatctattattgcggatcgacaagaatgagaaagaataccatgat |
42854950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 17 - 347
Target Start/End: Complemental strand, 42853434 - 42853108
Alignment:
| Q |
17 |
agttaaatgactctg--gtgtatccaaattcatgtagtcctcctaaaatatgagtcgaaaaaatcgtcaa------acagaataatagtctttgaaattt |
108 |
Q |
| |
|
||||||| ||||||| |||||||||| |||||||||||||||||||| | ||||| |||| || ||||| |||||||| ||||||||||||||| |
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| T |
42853434 |
agttaaacgactctgtagtgtatccaagttcatgtagtcctcctaaaagacgagtccaaaacattgtcaacactcaacagaata-tagtctttgaaattt |
42853336 |
T |
|
| Q |
109 |
acttctagtatcataaatcttgagtagttaaaattaaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaatgagatcaa |
208 |
Q |
| |
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|||||||| |||||| |||||||||| |||||| ||||||||||| || ||| ||||||||||||||||||||||| || ||| |||| | |
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| T |
42853335 |
acttctagaatcatacatcttgagtatttaaaa-----------attaaggaagatttaaatccctcccaatagtgaaaagaaaattaacatgggatcca |
42853247 |
T |
|
| Q |
209 |
gaaaaaaccatagtgagagaagcttttaacataccctcctccaagcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgttg-a |
307 |
Q |
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||||||||| ||| ||||||| ||||||||| |||||||||| || ||||||||||||||| ||||||||| ||||||||||| || ||| | ||| | |
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| T |
42853246 |
gaaaaaaccttagagagagaatcttttaacaggccctcctccaggcattttgaaagatccttgatcctccttttctgcatttcactaactgg-tattgca |
42853148 |
T |
|
| Q |
308 |
tgcagttgcattaagatcacaaagctggaaggtaaaatgt |
347 |
Q |
| |
|
||| |||||| ||| ||| || |||||||||||||||||| |
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| T |
42853147 |
tgccgttgcaataacatctcatagctggaaggtaaaatgt |
42853108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 177 - 363
Target Start/End: Complemental strand, 42860884 - 42860697
Alignment:
| Q |
177 |
caatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgagagaagcttttaacataccctcctccaagcgttttgaaagatccttaatcct |
276 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||| | ||||||| |||||| |||| ||||| |||| ||||||||||||||| ||||||| |
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| T |
42860884 |
caatagtgaaaagaaaattgaaatgagatccagaaaaaaccttcgtgagagcagctttgaacaggccctcgtccaggcgttttgaaagatctgtaatcct |
42860785 |
T |
|
| Q |
277 |
ccttctctgcatttcattagttggctgttgatgcagttgcattaagatcacaaagctgg-aaggtaaaatgtaaagtatttattattg |
363 |
Q |
| |
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|| | ||||||||||| || |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||| |||||||| |
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| T |
42860784 |
ccctttctgcatttcagtaattggctgttgatgccgttgcattaagatcacaaagctggaaaggtaaaatgtaaaatatctattattg |
42860697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 177 - 363
Target Start/End: Complemental strand, 42856807 - 42856620
Alignment:
| Q |
177 |
caatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgagagaagcttttaacataccctcctccaagcgttttgaaagatccttaatcct |
276 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||| | ||||||| |||||| |||| ||||| |||| ||||||||||||||| ||||| | |
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| T |
42856807 |
caatagtgaaaagaaaattgaaatgagatccagaaaaaaccttcgtgagagcagctttgaacaggccctcatccaggcgttttgaaagatctgtaatctt |
42856708 |
T |
|
| Q |
277 |
ccttctctgcatttcattagttggctgttgatgcagttgcattaagatcacaaagctgg-aaggtaaaatgtaaagtatttattattg |
363 |
Q |
| |
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|| | ||||||||||| || |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||| |||||||| |
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| T |
42856707 |
ccctttctgcatttcagtaattggctgttgatgccgttgcattaagatcacaaagctggaaaggtaaaatgtaaaatatctattattg |
42856620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 42855247 - 42855191
Alignment:
| Q |
144 |
aaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaat |
200 |
Q |
| |
|
|||||| |||||||||||||||| ||| ||||||||||||||||||||||| ||||| |
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|
| T |
42855247 |
aaaatttaaattaaggaagacttaaatccctcccaatagtgaaaagaaaattaaaat |
42855191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 42856986 - 42856910
Alignment:
| Q |
27 |
ctctggtgtatccaaattcatgtagtcctcctaaaatatgagtcgaaaaaatcgtcaaacagaataatagtctttgaa |
104 |
Q |
| |
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|||| |||||||||| ||||||||||| |||||||| | ||||||||| || ||| |||| ||||| |||||||||| |
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| T |
42856986 |
ctctagtgtatccaagttcatgtagtcatcctaaaagacaagtcgaaaacattgtc-aacacaataacagtctttgaa |
42856910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 42861063 - 42860987
Alignment:
| Q |
27 |
ctctggtgtatccaaattcatgtagtcctcctaaaatatgagtcgaaaaaatcgtcaaacagaataatagtctttgaa |
104 |
Q |
| |
|
|||| |||||||||| ||||||||||| |||||||| | ||||||||| || ||| |||| ||||| |||||||||| |
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|
| T |
42861063 |
ctctagtgtatccaagttcatgtagtcatcctaaaagacaagtcgaaaacattgtc-aacacaataacagtctttgaa |
42860987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 232 - 364
Target Start/End: Complemental strand, 27350 - 27218
Alignment:
| Q |
232 |
ttttaacataccctcctccaagcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgttgatgcagttgcattaagatcacaaag |
331 |
Q |
| |
|
||||||||| |||||||||| |||||||| ||||||||||||||||||| | || |||||| || ||||||| |||||| || | | ||| || || || |
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|
| T |
27350 |
ttttaacatgccctcctccaggcgttttgcaagatccttaatcctccttttttgaatttcactaattggctgctgatgccgtcgaaataacgtctcacag |
27251 |
T |
|
| Q |
332 |
ctggaaggtaaaatgtaaagtatttattattgc |
364 |
Q |
| |
|
||| || |||||||||||| |||| |||||||| |
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|
| T |
27250 |
ctgcaatgtaaaatgtaaaatattaattattgc |
27218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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