View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8764_high_5 (Length: 304)
Name: NF8764_high_5
Description: NF8764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8764_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 178 - 296
Target Start/End: Original strand, 47170179 - 47170297
Alignment:
| Q |
178 |
tgtctggttgggctattgctgttcatggcggcgcaggtgtggatcctaacctgccaccacaccgtcagcaagaagccaaacagcttcttaccgaatgtct |
277 |
Q |
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| T |
47170179 |
tgtctggttgggctattgctgttcatggcggtgcaggtgtggatcctaacctcccaccacaccgtcagcaagaagccaaacagcttcttaccgaatgtct |
47170278 |
T |
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| Q |
278 |
caatctcggtatctctgct |
296 |
Q |
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| T |
47170279 |
caatctcggtatctctgct |
47170297 |
T |
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Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 47170026 - 47170125
Alignment:
| Q |
17 |
accaaattacggtttaaattattccatttcccaaaataagttttcaacaccattttttcctataaaaagaccaaccagactctcaacttttcatcacact |
116 |
Q |
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| T |
47170026 |
accaaattacggtttaaattattccatttcccaaaataagttttcaacaccattttttcctataaaaagaccaaccagactctcaacttttcatcacact |
47170125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 42165733 - 42165647
Alignment:
| Q |
182 |
tggttgggctattgctgttcatggcggcgcaggtgtggatcctaacctgccaccacaccgtcagcaagaagccaaacagcttcttac |
268 |
Q |
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| T |
42165733 |
tggttgggctattgctgtgcatggtggcgccggtgtggatcctaatctcccaccacaacgtcaggaagaagccaaacaacttcttac |
42165647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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