View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8764_low_1 (Length: 586)
Name: NF8764_low_1
Description: NF8764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8764_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 486; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 6 - 571
Target Start/End: Original strand, 41028607 - 41029169
Alignment:
| Q |
6 |
gacatcatgcagctgctggtagataatcaattgaaaagtaagttgaacaatgaggcttatagttaggatttacccgtctgttgtctgctcaatcacatta |
105 |
Q |
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| T |
41028607 |
gacatcatgcagctgctggtagataatcaattgaaaagtaagttgaacaatgaggcttatagttaggatttacccttctgttgtctgctcaatcacatta |
41028706 |
T |
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| Q |
106 |
tcctgtttctggnnnnnnnctttccaatgagagttacatttaagctnnnnnnntatataagaatgtgataatgtatactgagaatgacaatttggtgtat |
205 |
Q |
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| T |
41028707 |
tcctgtttctggtttttttctttccaatgagagttacatttaagctaaaaatatatataagaatgtgataatgtatactgagaatgacaatttggtgtat |
41028806 |
T |
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| Q |
206 |
ggaaaatgtatataaggcggtctgtaattgaacagtggatgagaatgaactgtggaatttgtgaaaactgagaaaagtggaatttggagaaatgctgcag |
305 |
Q |
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| T |
41028807 |
ggaaaatgtatataaggcggtctgtaattgaacagtggatgagaatgaactgtggaatttgtgaaagctgagaaaagtggaatttggagaaatgctgcag |
41028906 |
T |
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| Q |
306 |
gtacattttatccaactcacaatacttcacttctttgcacttaatgtgtgattttttctagtaggttcttgagaaaaaataataataataatagtatcat |
405 |
Q |
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| T |
41028907 |
gtacattttatccaactcacaatacttcactt---tgcacttaatgtgtgattttttctagtaggttcttgagaaaaaataataataataatagtatcat |
41029003 |
T |
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| Q |
406 |
aattatgtagtcgttgtgcatgtaaaccaaccgaaaaacccgagtgtcaatgatttcgttttttctggcattcagtctaagaaagcaaccatcgaaccat |
505 |
Q |
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| T |
41029004 |
aattatgtagtcgttatgcatgtaaaccaaccgaaaaacccgagtgtcaatgatttcgttttttctggcgttcagtctaagaaagcaaccatcgaactat |
41029103 |
T |
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| Q |
506 |
tcaacaatgtcaatcttaccctgtcagtgatgagtaactttccagctctcgacgggattggtatct |
571 |
Q |
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| T |
41029104 |
tcaacaatgtcaatcttaccctgtcagtgatgagtaactttccagctctcgacggcattggtatct |
41029169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 41035450 - 41035560
Alignment:
| Q |
6 |
gacatcatgcagctgctggtagataatcaattgaaaagtaagttgaacaatgaggcttatagttaggatttacccgtctgttgtctgctcaatcacatta |
105 |
Q |
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||||||||||||| ||||| ||||| |||||||| | ||||||||| |||| |||| |||||||| | ||||| |||||||||||||||||||| ||| |
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| T |
41035450 |
gacatcatgcagcagctgggagatattcaattgacacataagttgaataatggggctcgtagttagggtctacccttctgttgtctgctcaatcacctta |
41035549 |
T |
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| Q |
106 |
tcctgtttctg |
116 |
Q |
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| T |
41035550 |
tcctgtttctg |
41035560 |
T |
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