View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8764_low_2 (Length: 491)
Name: NF8764_low_2
Description: NF8764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8764_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 23 - 266
Target Start/End: Original strand, 29274056 - 29274301
Alignment:
| Q |
23 |
ggccgatgctctttaaaatccatgttagggcttatcgtgttcttgatcatatcattcctccttcaaagaatgataagaagtcgatttcatgtctttgatg |
122 |
Q |
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| T |
29274056 |
ggccgatgctctttaaaatccatgttagggcttatcgtgttcttgatcatacaattcctccttcaaagaatgataagaagtcgatttcatgtctttgatg |
29274155 |
T |
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| Q |
123 |
tt--tgtgtttacagtggatttacggcactatctcttgcgatcctcccaacacaatcattgaacgtgattcaaccaccgaacttgcatgaaacatgtttt |
220 |
Q |
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| T |
29274156 |
ttgttgtgtttacagtggatttacggcactatctcttgcgatcttcccaacacaatcattgaacgtgattcaaccaccgaacttgcatgaaacatgtttt |
29274255 |
T |
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| Q |
221 |
ggtattttcgttggtagtaaaaattatatgtctctctacctaggac |
266 |
Q |
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| T |
29274256 |
ggtatttacgttggtaataaaaattatacgactctctacctaggac |
29274301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 298 - 473
Target Start/End: Original strand, 29274396 - 29274561
Alignment:
| Q |
298 |
ggacttcgactacgaggatgaattaaaatatgcatataatcttctatatttaattagcatttatatattaagaaattaattgtaggagatagtctcttga |
397 |
Q |
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| T |
29274396 |
ggacttcgactacgaggatgaattaaaatatgcatatcatcttctatatttaattagcatttatat----------taattgtaggaaatagtcttttga |
29274485 |
T |
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| Q |
398 |
ttgagagaacataattatatccatgacttttggtaaaatctcttgtatatattgtgaccaaatgaacaacaaacac |
473 |
Q |
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| T |
29274486 |
ttgagagaacataattatatccatgacttttggtaaaatctcttgtatatattgtgaccaaatgaacgacaaacac |
29274561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 294
Target Start/End: Original strand, 29274314 - 29274343
Alignment:
| Q |
265 |
acaagaatttttggaagtgaagatggtaaa |
294 |
Q |
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| T |
29274314 |
acaagaatttttggaagtgaagatggtaaa |
29274343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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