View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8764_low_6 (Length: 256)
Name: NF8764_low_6
Description: NF8764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8764_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 42030097 - 42029862
Alignment:
| Q |
16 |
ccttaacctgtcaaaagcggcaattctctttcnnnnnnnnggtgatttttagagggaaaaaataaatgtaacaaacatatcctatacctcaactggtaat |
115 |
Q |
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| T |
42030097 |
ccttaacctgtcaaaagtggcaattctctttcaaaaaa--ggtgatttttagagggaaaaaa--aatgtaacaaacatatcctatacctcaactggtaat |
42030002 |
T |
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| Q |
116 |
ttannnnnnnnnnnnncatgataaaaaatttattaaaattaaagaagaatgacgaagtgccaaagatgatttcatgttttcaaatttcaattagtctgct |
215 |
Q |
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| T |
42030001 |
ttatttttatttttttcatgataaaaaatttattaaaattaaagaagaatgacgaagtgccaaagatgatttcatgttttcaaatttcaattagtctgct |
42029902 |
T |
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| Q |
216 |
gctaatactgtacaaaacactataacatcgtggaaaagttc |
256 |
Q |
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| T |
42029901 |
gct-atactgtacaaaacactataacatcgtggaaaagttc |
42029862 |
T |
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