View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8764_low_8 (Length: 213)

Name: NF8764_low_8
Description: NF8764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8764_low_8
NF8764_low_8
[»] chr4 (3 HSPs)
chr4 (30-199)||(42030330-42030499)
chr4 (7-39)||(12241048-12241080)
chr4 (3-31)||(55899394-55899422)
[»] chr1 (2 HSPs)
chr1 (1-32)||(6829826-6829857)
chr1 (3-33)||(3826849-3826879)
[»] chr8 (1 HSPs)
chr8 (1-31)||(43419877-43419907)
[»] chr3 (2 HSPs)
chr3 (1-31)||(46344412-46344442)
chr3 (1-30)||(38944184-38944213)
[»] chr2 (4 HSPs)
chr2 (1-31)||(14140380-14140410)
chr2 (1-30)||(6884909-6884938)
chr2 (1-29)||(29893610-29893638)
chr2 (3-39)||(39737731-39737767)
[»] chr7 (2 HSPs)
chr7 (1-34)||(27778074-27778107)
chr7 (2-34)||(28548265-28548297)
[»] scaffold0592 (1 HSPs)
scaffold0592 (2-38)||(901-937)


Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 30 - 199
Target Start/End: Complemental strand, 42030499 - 42030330
Alignment:
Q  30 ttattaataaactcaccgcaccaaacatattattaattcgttttccatagaaacaccaaccaaacacattttaaagatttatgttttcactttgaattat 129  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  42030499 ttattaataaactcaccgcaccaaacatactattaattcgttttccatagaaacaccaaccaaacacactttaaatatttatgttttcactttgaattat 42030400  T
Q  130 gagctgaattcggatatgttattgaaacaaatgacttaaatgagatgaaacatgtctcttttaatttaac 199  Q
    |||||||||||| | |||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  42030399 gagctgaattcgtacatgttattgaaacaaatgacttaaataagataaaacatgtctcttttaatttaac 42030330  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 12241080 - 12241048
Alignment:
Q  7 tagttgtacaaatatcatttctcttattaataa 39  Q
    |||||||||||||||||||||||||| ||||||    
T  12241080 tagttgtacaaatatcatttctcttaataataa 12241048  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 55899422 - 55899394
Alignment:
Q  3 aaattagttgtacaaatatcatttctctt 31  Q
    |||||||||||||||||||||||||||||    
T  55899422 aaattagttgtacaaatatcatttctctt 55899394  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 6829826 - 6829857
Alignment:
Q  1 acaaattagttgtacaaatatcatttctctta 32  Q
    ||||||||||||||||||||||||||||||||    
T  6829826 acaaattagttgtacaaatatcatttctctta 6829857  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 33
Target Start/End: Original strand, 3826849 - 3826879
Alignment:
Q  3 aaattagttgtacaaatatcatttctcttat 33  Q
    |||||||||||||||||||||||||||||||    
T  3826849 aaattagttgtacaaatatcatttctcttat 3826879  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 43419907 - 43419877
Alignment:
Q  1 acaaattagttgtacaaatatcatttctctt 31  Q
    |||||||||||||||||||||||||||||||    
T  43419907 acaaattagttgtacaaatatcatttctctt 43419877  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 46344442 - 46344412
Alignment:
Q  1 acaaattagttgtacaaatatcatttctctt 31  Q
    |||||||||||||||||||||||||||||||    
T  46344442 acaaattagttgtacaaatatcatttctctt 46344412  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 38944184 - 38944213
Alignment:
Q  1 acaaattagttgtacaaatatcatttctct 30  Q
    ||||||||||||||||||||||||||||||    
T  38944184 acaaattagttgtacaaatatcatttctct 38944213  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 14140380 - 14140410
Alignment:
Q  1 acaaattagttgtacaaatatcatttctctt 31  Q
    |||||||||||||||||||||||||||||||    
T  14140380 acaaattagttgtacaaatatcatttctctt 14140410  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 6884938 - 6884909
Alignment:
Q  1 acaaattagttgtacaaatatcatttctct 30  Q
    ||||||||||||||||||||||||||||||    
T  6884938 acaaattagttgtacaaatatcatttctct 6884909  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 29893638 - 29893610
Alignment:
Q  1 acaaattagttgtacaaatatcatttctc 29  Q
    |||||||||||||||||||||||||||||    
T  29893638 acaaattagttgtacaaatatcatttctc 29893610  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 39737731 - 39737767
Alignment:
Q  3 aaattagttgtacaaatatcatttctcttattaataa 39  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  39737731 aaattggttgtacaaatatcatttctcttatttataa 39737767  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 27778107 - 27778074
Alignment:
Q  1 acaaattagttgtacaaatatcatttctcttatt 34  Q
    ||||| ||||||||||||||||||||||||||||    
T  27778107 acaaagtagttgtacaaatatcatttctcttatt 27778074  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 28548265 - 28548297
Alignment:
Q  2 caaattagttgtacaaatatcatttctcttatt 34  Q
    |||| ||||||||||||||||||||||||||||    
T  28548265 caaaatagttgtacaaatatcatttctcttatt 28548297  T

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Target: scaffold0592 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 937 - 901
Alignment:
Q  2 caaattagttgtacaaatatcatttctcttattaata 38  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  937 caaattggttgtacaaatatcatttctctttttaata 901  T

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