View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8765_high_1 (Length: 634)
Name: NF8765_high_1
Description: NF8765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8765_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 181 - 409
Target Start/End: Original strand, 40352849 - 40353076
Alignment:
| Q |
181 |
tgttagtgttctatgaagcacagtcactgtcacattaacatacctgataaattccataatttaacgaggtgtctttgtcaattagtataacaaaatcatc |
280 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40352849 |
tgttagtgttctatgaagcacagtcattgtcgcattaacatacctgataaattccataatttagcgaggcgtctttgtcaattagtataacaaaatcatc |
40352948 |
T |
|
| Q |
281 |
ttttaatagaaggttctgaaacttgagtgaatattgtacttataggcagatctattttctgtagaagtaacaatgatcattgatcacccttacaaaagaa |
380 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||||| ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40352949 |
ttttaataaaaggttctgaaac-tgagtgaatattgtacttatagacagatctgtttcctgtagaagtaacaacgatcattgatcacccttacaaaagaa |
40353047 |
T |
|
| Q |
381 |
acaataatataaatctgaataaattagtt |
409 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
40353048 |
acaataatataaatctgaataaattagtt |
40353076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 446 - 591
Target Start/End: Original strand, 40353087 - 40353232
Alignment:
| Q |
446 |
atatagatattgttaaagacattacgtatttcactgcatcaaagcaacaacaatcaaacaattatgaatcaaaacacaaataccaaacacattaaagaga |
545 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40353087 |
atatagatattgttaaagacattacgtatttcactgcatcaaagcaacaacaatcaaacaattatgagtcaaaacacaaataccaaacacattaaagaga |
40353186 |
T |
|
| Q |
546 |
gaaaaggaaagacgtttgaatccaagtttttgatattttaacaagc |
591 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
40353187 |
gaaaaggaaagaggtttgaatccaagtttttgaaattttaacaagc |
40353232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 40352679 - 40352779
Alignment:
| Q |
11 |
gagatgaacatgtgcaaaatggagattgtagtaagaaatacgtcaatgttgtcttctaacctccttttatgttttatgtattagtgttctaagagtcaat |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40352679 |
gagattaacatgtgcaaaatggagattgtagtaagaaatacgtcaatgttatcttctaacctcctttcatgttttatgtattagtgttctaagagtcaat |
40352778 |
T |
|
| Q |
111 |
a |
111 |
Q |
| |
|
| |
|
|
| T |
40352779 |
a |
40352779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University