View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8765_high_2 (Length: 288)
Name: NF8765_high_2
Description: NF8765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8765_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 34542023 - 34541768
Alignment:
| Q |
18 |
aaatgatgggcattgtgattttgatttcccgccgaaattaaaagaaaaccctcattcaaatcaattttccacttttcttaccccccttcgttctcagaga |
117 |
Q |
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| T |
34542023 |
aaatgatgggcattgtgattttgatttcccgccgaaattaaaagaaaaccctcattcaaatcaattttccacttttcttaccccc-ttcgttctcagaga |
34541925 |
T |
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| Q |
118 |
cccacccagttgcatcaaaatgagtagtagttctcctagtccaatggagacggagcaaaaccctacgaccgaccaaaatggcgccgtagcttcccaacgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34541924 |
cccacccagttgcatcaaaatgagtagtagttctcctagtccaatggagacggagcaaaaccctacgaccgaccaaaacggcgccgtagcttcccaacgt |
34541825 |
T |
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| Q |
218 |
tcacctctaccaccatctccccctcctcctcttcctccggaggataaaattctcgtc |
274 |
Q |
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| T |
34541824 |
tcacctctaccaccatctccccctcctcctcttccaccggaggataaaattctcgtc |
34541768 |
T |
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