View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8765_high_4 (Length: 241)
Name: NF8765_high_4
Description: NF8765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8765_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 28931240 - 28931015
Alignment:
| Q |
1 |
tggttttgatttaaaaattaaatgtattttgatgaactaaaagcactatagtcatgttggtctattttctatttagctcattgattttttctctccatta |
100 |
Q |
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| T |
28931240 |
tggttttgatataaaaattaaatgtattttgatgaactaaaagcactatagtcatgttggtctattttctatttagctcattgattttttctctccatta |
28931141 |
T |
|
| Q |
101 |
tgacatgtttattttcttgaactcttgtta-caggaatacattgcaaataaacttgtcgatgttaagacaatgaacggcaaagacattttagatttgtat |
199 |
Q |
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| T |
28931140 |
tgacatgtttattttcttgaactcttgttaccaggaatacattgcaaataaacttgtcgatgttaagacaatgaacggcaaagacattttagatttgtat |
28931041 |
T |
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| Q |
200 |
tatcagacaattcctggacttttagt |
225 |
Q |
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|||||||||||||||||||||||||| |
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| T |
28931040 |
tatcagacaattcctggacttttagt |
28931015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 167
Target Start/End: Original strand, 35718537 - 35718633
Alignment:
| Q |
70 |
tatttagctcattgatttt-ttctctccattatgacatgtttattttcttgaactcttgttacaggaatacattgcaaataaacttgtcgatgttaaga |
167 |
Q |
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| T |
35718537 |
tatttagcacatttattttgttctctccattctgacatgtttattttcttgaactct--ttacagtcttacattccaaagacactagtcgatgttaaga |
35718633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 3591317 - 3591269
Alignment:
| Q |
86 |
tttttctctccattatgacat-gtttattttcttgaactcttgttacag |
133 |
Q |
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|||||||||||||| |||||| |||||| |||||||||||||||||||| |
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| T |
3591317 |
tttttctctccattctgacattgtttatcttcttgaactcttgttacag |
3591269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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