View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8765_high_5 (Length: 239)
Name: NF8765_high_5
Description: NF8765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8765_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 7145825 - 7146033
Alignment:
| Q |
14 |
ttattcttaattctaatcaaggtcttggcaatctcagcctccttacctcccttcttctccattgatttcttcattgcctttctcaagagtgtcatgttgc |
113 |
Q |
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| T |
7145825 |
ttattcttaattctaatcaaggtcttggcaatctcagcctccttacctcccttcttctccattgatttcttcattgcctttctcaagagtgtcatgttgc |
7145924 |
T |
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| Q |
114 |
tgcgaaagggttttctcttttcacttttacttttgcggcaatagttttcagtggtttttggagttggaggcgaagtggcgttggatgaatgcatgttgat |
213 |
Q |
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| T |
7145925 |
tgcgaaagggttttctcttttcacttttacttttgcggcaatagttttcagtggtttttggagttggaggcgaagtggcgttggatgaatgcatgttgat |
7146024 |
T |
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| Q |
214 |
gctgtaaat |
222 |
Q |
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| T |
7146025 |
gctgtaaat |
7146033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 7162879 - 7162937
Alignment:
| Q |
50 |
gcctccttacctcccttcttctccattgatttcttcattgcctttctcaagagtgtcat |
108 |
Q |
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| T |
7162879 |
gcctcctttcctcccttcttctccattgatttcttaattgcctttttcaatagtatcat |
7162937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 7163000 - 7163045
Alignment:
| Q |
48 |
cagcctccttacctcccttcttctccattgatttcttcattgcctt |
93 |
Q |
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| T |
7163000 |
cagcctccttccctcccttcatctccattgatttctttatcgcctt |
7163045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 28817084 - 28817148
Alignment:
| Q |
21 |
taattctaatcaaggtcttggcaatctcagcctccttacctcccttcttctccattgatttcttc |
85 |
Q |
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| T |
28817084 |
taattgtaatcaaggtcttggcaatctcagcctccttccctcccttcttctccgttgatttcttc |
28817148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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