View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8765_low_3 (Length: 285)
Name: NF8765_low_3
Description: NF8765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8765_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 5 - 262
Target Start/End: Complemental strand, 28635312 - 28635053
Alignment:
| Q |
5 |
gcaatcatggaagagatttcgaacccatgatatggctgtgtttccgtgctccttatatagttcagtgacttgttgtttaattatctcttctgcttttggg |
104 |
Q |
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| T |
28635312 |
gcaatcatggaagagatttcgaacccaggaaatggctgtgtttccatgctggttatatagttcagtgacttgttgtttgattatctcttctgcttttggg |
28635213 |
T |
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| Q |
105 |
cagctgttggagtagtagttcagctggagctgacttttccctgcgcataaaaatacatggcattgttaagttgcatgtaagtttttcacttgataatgca |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28635212 |
cagctgttggagtagtagttcagctggagctgacttttccctgcgcataaaaatacatggcattgttaagttgcatgtaagtctttcacttgataatgca |
28635113 |
T |
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| Q |
205 |
taac--tatacatataaattttgtcaaaagtctttaatattagtcacaaaagaaagagag |
262 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28635112 |
taactatatacatataaattttgtcaaaagtctttaatattagtcacaaaagaaagagag |
28635053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 163
Target Start/End: Complemental strand, 28654605 - 28654450
Alignment:
| Q |
5 |
gcaatcatggaagagatttcgaacccatgatatggctgtgtttccgtgctccttatatagttcagtgacttgttgtttaattatctcttctgcttttggg |
104 |
Q |
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| T |
28654605 |
gcaatcatggaagagatttcgaagccacgaaatggctgtgcttccttgat---tatatagttcagtgacttgctgcttgattatctcttcggctcttggg |
28654509 |
T |
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| Q |
105 |
cagctgttggagtagtagttcagctggagctgacttttccctgcgcataaaaatacatg |
163 |
Q |
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| T |
28654508 |
cagctggtggagtagtagttcagctggagctggcttttccctgtacataaaaatacatg |
28654450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 28663002 - 28662834
Alignment:
| Q |
5 |
gcaatcatggaagagatttcgaacccatgatatggctgtgtttccgtgctccttatatagttcagtgacttgttgtttaattatctcttctgcttttggg |
104 |
Q |
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|||||||||||||||||||| |||||| || | ||||||||||| ||||| ||||| |||||| |||||| ||| || || |||||||||||||||||| |
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| T |
28663002 |
gcaatcatggaagagatttctaacccacgaaaccgctgtgtttccatgctcgttatacagttcaatgactttttgcttgatgatctcttctgcttttggg |
28662903 |
T |
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| Q |
105 |
cagctgttggagtagtagttcagctggagctgacttttccctgcgcataaaaatacatggcattgttaa |
173 |
Q |
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| T |
28662902 |
cagctcttggagtagtagttcaattgtagctggcttttccctacgcaaaaaaatacatggcattattaa |
28662834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 28604934 - 28604815
Alignment:
| Q |
5 |
gcaatcatggaagagatttcgaacccatgatatggctgtgtttccgtgctccttatatagttcagtgacttgttgtttaattatctcttctgcttttggg |
104 |
Q |
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|||||||||||||||||||| |||||| || || ||||||||||| |||| ||||| | |||| |||||||||| || || |||||||||||||||||| |
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| T |
28604934 |
gcaatcatggaagagatttctaacccacgaaattgctgtgtttccatgcttgttatacaattcattgacttgttgcttgatgatctcttctgcttttggg |
28604835 |
T |
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| Q |
105 |
cagctgttggagtagtagtt |
124 |
Q |
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||||| |||||||||||||| |
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| T |
28604834 |
cagctcttggagtagtagtt |
28604815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 28654055 - 28654023
Alignment:
| Q |
173 |
agttgcatgtaagtttttcacttgataatgcat |
205 |
Q |
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| T |
28654055 |
agttgcatgcaagtttttcacttgataatgcat |
28654023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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