View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8765_low_4 (Length: 241)
Name: NF8765_low_4
Description: NF8765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8765_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 33499216 - 33499440
Alignment:
| Q |
1 |
tgatcataaaacttgtcttttcattccgtatgaattttattttcct-cctatcggaaacagttagaattggccatctttgatggtcctatgagacatttt |
99 |
Q |
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| T |
33499216 |
tgatcataaaacttgtcttttcattccgtatgaattttattttccttccgatcggaaacagttagaattggccatctttgatggtcctatgagacatttt |
33499315 |
T |
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| Q |
100 |
atggtgtttaaactagttaaattatttgctttttgtgtttgcttttccaatattgtaaactgcatatggtttatttaaattaataaagtttactttgaaa |
199 |
Q |
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| T |
33499316 |
atggtgtttaaactagttaaattatttgctttttgtgtttgcttttctaatattgtaaactgcatatggtttatttaaattaataaagtttactttgaaa |
33499415 |
T |
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| Q |
200 |
attagtacaaatggaatatccattt |
224 |
Q |
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| T |
33499416 |
attagtacaaatggaatatccattt |
33499440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 75 - 225
Target Start/End: Original strand, 33486210 - 33486357
Alignment:
| Q |
75 |
ctttgatggtcctatgagacatttt-atggtgtttaaactagtta-aattatttgctttttgtgtttgcttttccaatattgtaaactgcatatggttta |
172 |
Q |
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|||||||||||||| ||| ||||| |||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
33486210 |
ctttgatggtcctaagagcaatttttatggtgtttaaactagttttaattatatgctttttgtgtttgcttttcc---ggtgtaaactgcataaggttta |
33486306 |
T |
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| Q |
173 |
tttaaattaataaagtttactttgaaaattagtacaaatggaatatccatttt |
225 |
Q |
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||| |||| ||||| |||||||| ||||||| ||||| |||||||||||||| |
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| T |
33486307 |
tttgaattcataaaatttacttttaaaatta--acaaacggaatatccatttt |
33486357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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