View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8765_low_7 (Length: 227)
Name: NF8765_low_7
Description: NF8765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8765_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 33499185 - 33498965
Alignment:
| Q |
1 |
aaagctgcttgcttgtaagtttcctccatcgagtttgcgccaagtgaagcttgttttgcctgcaaaatcaacacaattcaattgagctattcgcactcac |
100 |
Q |
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| T |
33499185 |
aaagctgcttgcttgtaagtttcctccatcgagtttgcgccaagtgaagcttgttttgcctgcaaaatcaacacaattcaattgagctattcgctctcac |
33499086 |
T |
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| Q |
101 |
actactcaagagaagagaaggtttgaaacttacatgggccataatcatgtagaagtttccatttgcattgcacataatgttggcagaaataacatcaatc |
200 |
Q |
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| T |
33499085 |
actactcaagagaagagaaggtttgaaacttacatgggccataatcatgtagaagtttccatttgcattgcacataatgttggcagaaataacatcaatc |
33498986 |
T |
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| Q |
201 |
ttatgtttctctaacaccaaa |
221 |
Q |
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||||||||||| ||||||||| |
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| T |
33498985 |
ttatgtttctccaacaccaaa |
33498965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 108 - 221
Target Start/End: Complemental strand, 33485867 - 33485754
Alignment:
| Q |
108 |
aagagaagagaaggtttgaaacttacatgggccataatcatgtagaagtttccatttgcattgcacataatgttggcagaaataacatcaatcttatgtt |
207 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33485867 |
aagaggagagaaggtttgaaacttacatgggccataatcatgtagaagtttccatttgcattgcacataatgttggcagaaataacatcaatcttatgtt |
33485768 |
T |
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| Q |
208 |
tctctaacaccaaa |
221 |
Q |
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|||| ||||||||| |
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| T |
33485767 |
tctccaacaccaaa |
33485754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 33486159 - 33486058
Alignment:
| Q |
10 |
tgcttgtaagtttcctccatcgagtttgcgccaagtgaagcttgttttgcctgcaaaatcaacacaattcaattgagctattcgcactcacactactcaa |
109 |
Q |
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|||||||| ||||||| ||| || |||||| || ||||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||| |
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| T |
33486159 |
tgcttgtatgtttccttcattgaatttgcgtcatgtgaagcttgttttgcctgcaaaattaagacaattcaattgagctattcacactcgtactactcaa |
33486060 |
T |
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| Q |
110 |
ga |
111 |
Q |
| |
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|| |
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| T |
33486059 |
ga |
33486058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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