View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8765_low_8 (Length: 222)

Name: NF8765_low_8
Description: NF8765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8765_low_8
NF8765_low_8
[»] chr5 (18 HSPs)
chr5 (12-200)||(30059245-30059430)
chr5 (12-202)||(30339553-30339740)
chr5 (12-203)||(30748531-30748719)
chr5 (16-200)||(30434714-30434895)
chr5 (16-201)||(30398957-30399139)
chr5 (12-200)||(30243402-30243587)
chr5 (12-202)||(29852187-29852374)
chr5 (12-200)||(29871074-29871259)
chr5 (12-202)||(30482292-30482479)
chr5 (12-191)||(30678210-30678386)
chr5 (99-202)||(4380630-4380733)
chr5 (98-201)||(30205481-30205584)
chr5 (96-198)||(30203119-30203221)
chr5 (115-203)||(30474363-30474451)
chr5 (97-196)||(29709943-29710042)
chr5 (162-201)||(30714463-30714502)
chr5 (13-66)||(30205399-30205452)
chr5 (113-201)||(30429934-30430022)
[»] chr4 (2 HSPs)
chr4 (15-200)||(20297633-20297818)
chr4 (13-66)||(20303720-20303773)
[»] chr7 (1 HSPs)
chr7 (12-202)||(26706220-26706407)
[»] chr1 (2 HSPs)
chr1 (113-202)||(7098401-7098490)
chr1 (13-66)||(7582889-7582942)


Alignment Details
Target: chr5 (Bit Score: 123; Significance: 2e-63; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 30059245 - 30059430
Alignment:
Q  12 cagagattgaagagaagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaag 111  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||   ||||||||   ||| || || ||||| ||||||||||||||||    
T  30059245 cagagattgaagagaagtaaggtttttgaacatcccctctgggaaggatgttat---tccttcacccccatttacgaaaagctgagtaagaccacggaag 30059341  T
Q  112 gtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggca 200  Q
    |||||||||||||||||||||||||||||||||||  |||||| |||| ||||||||||||||||||||||||||||||||||| ||||    
T  30059342 gtagagattgacctcagtaactcattgttacattccgatacagtgagggatttaagagatggaagacatggcagtccaagtttacggca 30059430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 30339740 - 30339553
Alignment:
Q  12 cagagattgaagagaagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaag 111  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||   |||||||  ||||||| |||||||| ||||||||||||||||    
T  30339740 cagagattgaagagaagtaaggtttttgaacatcccctctgggaaggatgttatt---ccttcaccttcatataagataagctgagtaagaccacggaag 30339644  T
Q  112 gtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaat 202  Q
    ||||||||||||||||||||||||||||||||| | |  |||  ||||  ||||||||||||||||||||||||||||| |||||||||||    
T  30339643 gtagagattgacctcagtaactcattgttacatccctcaacatagaggtctttaagagatggaagacatggcagtccaattttagggcaat 30339553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 30748531 - 30748719
Alignment:
Q  12 cagagattgaagagaagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaag 111  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||   |||||||    || |||| |||||| ||||||||||||||||    
T  30748531 cagagattgaagagaagtaaggtttttgaacatctcctctggtaaggatgttatt---ccttcaccactatttagggtaagctgagtaagaccacggaag 30748627  T
Q  112 gtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaatc 203  Q
    |||||||||||||||||||||||||||||||||||  ||| |  |||| ||||||||||||||||||||||||||||||||| |||||||||    
T  30748628 gtagagattgacctcagtaactcattgttacattcccataaatggagggatttaagagatggaagacatggcagtccaagttcagggcaatc 30748719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 30434714 - 30434895
Alignment:
Q  16 gattgaagagaagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtag 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||   |||||||    || |||| |||||| ||||||||||||||||||||    
T  30434714 gattgaagagaagtaaggtttttgaacatctcctctggtaaggatgttatt---ccttcaccactatttagggtaagctgagtaagaccacggaaggtag 30434810  T
Q  116 agattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggca 200  Q
    ||||||||||||||||||||||||||| | |||  ||| |||||  |||||||||||||||||||||||||||||||||||||||    
T  30434811 agattgacctcagtaactcattgttacgtccatcgacaccgaggtctttaagagatggaagacatggcagtccaagtttagggca 30434895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 30398957 - 30399139
Alignment:
Q  16 gattgaagagaagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtag 115  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||   |||  || || || ||||  ||||| ||||||||||||||||||||    
T  30398957 gattgaagagaagtaaggtttttgaacatcccctctgggaaggatgttatt---cctctaccgtaatctagggaaagctcagtaagaccacggaaggtag 30399053  T
Q  116 agattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaa 201  Q
    ||||||||||||||||||||||||||||| |  |||||  |||| |||||||||||||||||||||||| ||||||||||||||||    
T  30399054 agattgacctcagtaactcattgttacatcccaatacatagagggatttaagagatggaagacatggcactccaagtttagggcaa 30399139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 12 - 200
Target Start/End: Complemental strand, 30243587 - 30243402
Alignment:
Q  12 cagagattgaagagaagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaag 111  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||   ||   || || |  |||  |||||| ||||||||||||||||    
T  30243587 cagagattgaagagaagtaaggtttttgaacatcccctctgggaaggatgttatt---ccgaaaccgtgaattagtttaagctgagtaagaccacggaag 30243491  T
Q  112 gtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggca 200  Q
    |||||||||||||||||||||||||||||||||||  |||||  ||||  |||||||||||||||||||||||||||||||||||||||    
T  30243490 gtagagattgacctcagtaactcattgttacattcccatacaaagaggtctttaagagatggaagacatggcagtccaagtttagggca 30243402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 29852187 - 29852374
Alignment:
Q  12 cagagattgaagagaagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaag 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |      || ||||| |||   |||||| |||||||||||||||    
T  29852187 cagagattgaagagaagtaaggtttttgaacatctcctctgggaaggatgttattctgaa---accgtcatgtagccaaagctttgtaagaccacggaag 29852283  T
Q  112 gtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaat 202  Q
    ||||||||||||||||||||||||||||||||| |  |||||  ||| | ||| |||||||||||||||||||||||||||| ||||||||    
T  29852284 gtagagattgacctcagtaactcattgttacatcccaatacatggagcagtttcagagatggaagacatggcagtccaagttcagggcaat 29852374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 29871074 - 29871259
Alignment:
Q  12 cagagattgaagagaagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaag 111  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||||   |||||||| ||||  ||||  ||||| |||||||||||  |||    
T  29871074 cagagatagaagagaagtaaggtttttgaacatcccctctgggaaggatgttat---tccttcaccgtcacttagggcaagctgagtaagaccacaaaag 29871170  T
Q  112 gtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggca 200  Q
    |||||||||||||||||||||||||||||||||  ||   || |||||  ||||||||||||||||||||||||||||| |||||||||    
T  29871171 gtagagattgacctcagtaactcattgttacatggatcggcaacgaggtctttaagagatggaagacatggcagtccaattttagggca 29871259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 30482292 - 30482479
Alignment:
Q  12 cagagattgaagagaagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaag 111  Q
    |||| |||||||| |||||||||||||||||||| ||||||||||||||||||||   |||||||  ||   |||| |||||| ||||||||||||||||    
T  30482292 cagatattgaagacaagtaaggtttttgaacatcccctctgggaaggatgttatt---ccttcaccctccattagggtaagctgagtaagaccacggaag 30482388  T
Q  112 gtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaat 202  Q
    ||||||||||||||||||||||||||||||||| |||  |||  ||||  || ||||||||||||| ||||||||||||||||| ||||||    
T  30482389 gtagagattgacctcagtaactcattgttacatccatccacatagaggccttcaagagatggaagagatggcagtccaagtttatggcaat 30482479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 30678386 - 30678210
Alignment:
Q  12 cagagattgaagagaagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaag 111  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||   ||   || || |||||||  ||||| ||||||||||||||||    
T  30678386 cagagattgaagagaagtaaggtttttgaacatcccctctgggaaggatgttatt---ccgaaaccgttatatagggaaagctgagtaagaccacggaag 30678290  T
Q  112 gtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaag 191  Q
    ||||||||||||||||||||||||||||||||| |  |||   ||||   ||||||||||||||||||||||||||||||    
T  30678289 gtagagattgacctcagtaactcattgttacatccccatatctcgagttctttaagagatggaagacatggcagtccaag 30678210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 99 - 202
Target Start/End: Original strand, 4380630 - 4380733
Alignment:
Q  99 aagaccacggaaggtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttaggg 198  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| | |  ||| |||||  ||||||||||||| |||||||||||||||||||||||    
T  4380630 aagaccacgaaaggtagagattgacctcagtaactcattgttacatccctcaacaacgaggtgtttaagagatggatgacatggcagtccaagtttaggg 4380729  T
Q  199 caat 202  Q
    ||||    
T  4380730 caat 4380733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 98 - 201
Target Start/End: Original strand, 30205481 - 30205584
Alignment:
Q  98 taagaccacggaaggtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagg 197  Q
    |||||||||  ||| |||||||||||||||| ||||||||||||||| |  ||||| | |||  ||||||||||  ||||||||||||||||||||||||    
T  30205481 taagaccacaaaagctagagattgacctcagcaactcattgttacatcccaatacatctaggtttttaagagatacaagacatggcagtccaagtttagg 30205580  T
Q  198 gcaa 201  Q
    ||||    
T  30205581 gcaa 30205584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 198
Target Start/End: Original strand, 30203119 - 30203221
Alignment:
Q  96 agtaagaccacggaaggtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagttta 195  Q
    ||||||||||  |||| ||||||| |||||||||||||||||||||||||||| ||||   |||  ||||| | |||||||||||| ||||  |||||||    
T  30203119 agtaagaccatagaagctagagatcgacctcagtaactcattgttacattcatttacataaaggtttttaacatatggaagacatgacagttgaagttta 30203218  T
Q  196 ggg 198  Q
    |||    
T  30203219 ggg 30203221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 30474363 - 30474451
Alignment:
Q  115 gagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaatc 203  Q
    |||||||| ||||||||||||||||||||| || |||||  ||||  |||||| |||||||| |||||||   ||||||||||||||||    
T  30474363 gagattgatctcagtaactcattgttacatccaaatacaatgaggtctttaagggatggaaggcatggcaacacaagtttagggcaatc 30474451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 97 - 196
Target Start/End: Complemental strand, 29710042 - 29709943
Alignment:
Q  97 gtaagaccacggaaggtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttag 196  Q
    ||||||||||   ||||||||||||| ||||||||||||||||||||| |  | ||| |||||  | ||||||| |||||||||| |||| |||||||||    
T  29710042 gtaagaccacatgaggtagagattgatctcagtaactcattgttacatcccgaaacatcgaggtctataagagacggaagacatgacagttcaagtttag 29709943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 30714502 - 30714463
Alignment:
Q  162 tttaagagatggaagacatggcagtccaagtttagggcaa 201  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30714502 tttaagagatggaagacatggcagtccaagtttagggcaa 30714463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 30205399 - 30205452
Alignment:
Q  13 agagattgaagagaagtaaggtttttgaacatctcctctgggaaggatgttatt 66  Q
    |||| ||||||| |||||||||||||||||||| | || |||||||||||||||    
T  30205399 agagcttgaagacaagtaaggtttttgaacatcccgtccgggaaggatgttatt 30205452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 30429934 - 30430022
Alignment:
Q  113 tagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaa 201  Q
    |||||||||||  ||||||||||||||||||| ||| ||||  |||   ||||| ||||| ||| |||||||  ||||||||| |||||    
T  30429934 tagagattgactccagtaactcattgttacatccatctacaatgagttctttaaaagatgaaaggcatggcaacccaagtttaaggcaa 30430022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 20297818 - 20297633
Alignment:
Q  15 agattgaagagaagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggta 114  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||| ||||  ||||  ||||| ||||||||||||||| |||    
T  20297818 agattgaagagaagtaaggtttttgaacatcccatctgggaaggatgttattatttcttcactgtcaagtagggaaagctgagtaagaccacggaaagta 20297719  T
Q  115 gagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggca 200  Q
    |||||||| |||||||||||||||||||||  ||  ||| ||||| |||||||||||||||||||||||| |||||||||||||||    
T  20297718 gagattgatctcagtaactcattgttacatggatcgacatcgagggatttaagagatggaagacatggcattccaagtttagggca 20297633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 20303773 - 20303720
Alignment:
Q  13 agagattgaagagaagtaaggtttttgaacatctcctctgggaaggatgttatt 66  Q
    |||| ||||||| ||||||||||| |||||||| ||| | ||||||||||||||    
T  20303773 agagtttgaagacaagtaaggtttatgaacatccccttttggaaggatgttatt 20303720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 26706220 - 26706407
Alignment:
Q  12 cagagattgaagagaagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaag 111  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||   ||||| | || ||||||| |||||| |||||||||||| |||    
T  26706220 cagagattgaagagaagtaaggtttttgaacatcccctctgggaaggatgttatt---ccttcgccgttatatagggtaagctcagtaagaccacgaaag 26706316  T
Q  112 gtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaat 202  Q
    |||| |||||||||||||||||||||||||||| |  | |||  |||| |||||||||||||||||||||||||||| || ||||||||||    
T  26706317 gtagggattgacctcagtaactcattgttacatcccgaaacattgagggatttaagagatggaagacatggcagtcctagcttagggcaat 26706407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 202
Target Start/End: Original strand, 7098401 - 7098490
Alignment:
Q  113 tagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaat 202  Q
    ||||||||||| |||| | || ||| |||||||||| ||||  ||||  | ||| |||||||||||| || ||| |||||||||||||||    
T  7098401 tagagattgacttcagcatcttattattacattcatctacatagaggtctctaacagatggaagacacggaagttcaagtttagggcaat 7098490  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 7582942 - 7582889
Alignment:
Q  13 agagattgaagagaagtaaggtttttgaacatctcctctgggaaggatgttatt 66  Q
    |||||||| ||| |||||||||||   |||||||||| ||||||||||||||||    
T  7582942 agagattggagacaagtaaggtttccaaacatctcctttgggaaggatgttatt 7582889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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