View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8766_high_10 (Length: 253)

Name: NF8766_high_10
Description: NF8766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8766_high_10
NF8766_high_10
[»] chr5 (1 HSPs)
chr5 (12-252)||(40961354-40961594)
[»] chr2 (2 HSPs)
chr2 (122-214)||(12129168-12129258)
chr2 (122-190)||(37528913-37528980)
[»] chr6 (1 HSPs)
chr6 (122-240)||(30453614-30453730)
[»] chr1 (2 HSPs)
chr1 (170-241)||(51377599-51377673)
chr1 (122-192)||(41005179-41005248)
[»] chr7 (1 HSPs)
chr7 (122-192)||(31440124-31440193)
[»] chr4 (1 HSPs)
chr4 (122-239)||(32026118-32026233)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 40961594 - 40961354
Alignment:
Q  12 gattatacttgtacccctataaacactcttaactatccaaaatacgagaaatatttgcttaaagacaaacctaaatnnnnnnnnttggacacactcacga 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||| |    
T  40961594 gattgtacttgtacccctataaacactcttaactatccaaaatacgagaaatatttgcttaaagacaaacctaaataaaaaaaattggacacactcacaa 40961495  T
Q  112 atgnnnnnnnaaagagaaaatggtttaatgaagttggatgatatgactaacttatttatatcttttaatttctttcattgttttgtgtgtccaaataatt 211  Q
    |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40961494 atgtttttttaaagagaaaatggtttaatgaagttggatgatatgactaacttatttatatcttttaatttctttcattgttttgtgtgtccaaataatt 40961395  T
Q  212 ttaattgcaattgtgtctatgtaagactagctgccaaaata 252  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  40961394 ttaattgcaattgtgtctatgtaagactaactgccaaaata 40961354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 122 - 214
Target Start/End: Complemental strand, 12129258 - 12129168
Alignment:
Q  122 aaagagaaaatggtttaatgaagttggatgatatgactaacttatttatatcttttaatttctttcattgttttgtgtgtccaaataatttta 214  Q
    ||||| ||| ||||||||||| |||| ||||||||||||| ||||||||    |||||||| |||||||||| ||||||||||||||||||||    
T  12129258 aaagataaattggtttaatgatgttgaatgatatgactaatttatttatta--tttaatttttttcattgttgtgtgtgtccaaataatttta 12129168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 37528980 - 37528913
Alignment:
Q  122 aaagagaaaatggtttaatgaagttggatgatatgactaacttatttatatcttttaatttctttcatt 190  Q
    ||||||||||||||||||| |  |||  |||| ||||||| |||||| |||||||||||||||||||||    
T  37528980 aaagagaaaatggtttaataatattgagtgatgtgactaatttattt-tatcttttaatttctttcatt 37528913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 240
Target Start/End: Complemental strand, 30453730 - 30453614
Alignment:
Q  122 aaagagaaaatggtttaatgaagttggatgatatgactaacttatttatatcttttaatttctttcattgttttgtgtgtccaaataattttaattgcaa 221  Q
    ||||| ||||| |||||||||  ||| ||||| ||||||| ||||||||  |||||| ||| ||||||| || |||||| | ||||||||||  ||| |     
T  30453730 aaagataaaatagtttaatgatattgaatgatttgactaatttatttat--cttttagtttttttcattattgtgtgtgcctaaataattttgtttgtat 30453633  T
Q  222 ttgtgtctatgtaagacta 240  Q
    |||| ||||||||||||||    
T  30453632 ttgtatctatgtaagacta 30453614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 241
Target Start/End: Original strand, 51377599 - 51377673
Alignment:
Q  170 tatcttttaatttctttcattgttttgtgtgt--ccaaataattttaattgcaattgtgtc-tatgtaagactag 241  Q
    |||||||||||||||| || |||| |||||||  ||||||||||||| ||| ||||||||| |||||||||||||    
T  51377599 tatcttttaatttcttccactgttgtgtgtgtgaccaaataattttacttgtaattgtgtcttatgtaagactag 51377673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 192
Target Start/End: Original strand, 41005179 - 41005248
Alignment:
Q  122 aaagagaaaatggtttaatgaagttggatgatatgactaacttatttatatcttttaatttctttcattgt 192  Q
    ||||||||||| ||||||||| |||   |||| ||||||| |||||| ||||||||||||| |||||||||    
T  41005179 aaagagaaaatagtttaatgatgttaagtgatgtgactaatttattt-tatcttttaatttttttcattgt 41005248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 192
Target Start/End: Complemental strand, 31440193 - 31440124
Alignment:
Q  122 aaagagaaaatggtttaatgaagttggatgatatgactaacttatttatatcttttaatttctttcattgt 192  Q
    ||||||||||| ||||||||| ||||  |||| ||| ||| ||||||  ||||||||||||||||||||||    
T  31440193 aaagagaaaattgtttaatgatgttgagtgatgtgattaatttatttc-atcttttaatttctttcattgt 31440124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 32026118 - 32026233
Alignment:
Q  122 aaagagaaaatggtttaatgaagttggatgatatgactaacttatttatatcttttaatttctttcattgttttgtgtgtccaaataattttaattgcaa 221  Q
    ||||| ||| ||||||||||| |||| ||||  ||||| | ||||||||  | ||||||||  ||||||||| |||||| |||||| |||||| |||       
T  32026118 aaagataaattggtttaatgatgttgaatgacgtgactgatttatttat--catttaattttcttcattgttgtgtgtgcccaaattattttatttgtgt 32026215  T
Q  222 ttgtgtctatgtaagact 239  Q
    |||| |||||||||||||    
T  32026216 ttgtatctatgtaagact 32026233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University