View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8766_high_2 (Length: 484)
Name: NF8766_high_2
Description: NF8766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8766_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 8 - 468
Target Start/End: Complemental strand, 40961326 - 40960866
Alignment:
| Q |
8 |
caatggacaggcacactcaacattagcaacaacctcaggttttaaagagatggaagcggtctcaatcgagctttgttagatgcaacattgacgcatcgtt |
107 |
Q |
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| T |
40961326 |
caatggacaggcacactcaacattagcaacaacctcaggttttaaagagatggcagcggtctccatcgagctttgttagatgcaacattgatgcgtcgtt |
40961227 |
T |
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| Q |
108 |
ctctaagccgcaaaacaaagtgagaataggcatatcatgtgttcatgatgagtttgggattttcatgagagcaaaaaggtggtggatcggccaataatgg |
207 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40961226 |
ctctgagcctcaaaacaaagtgagaataggcatatcatgtgttcacgatgagtttgggattttcatgagagcaaaaaggtggtggttcggccaataatgg |
40961127 |
T |
|
| Q |
208 |
agattaatgtgggagacattgtgggattgttggcttctattaaatggatgaaagagtcggggtttaaacaaattatatttactctttactctaaaaatgt |
307 |
Q |
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| T |
40961126 |
agattaatgtgggagacattgtgggattgttggcttctattaaatggatgaaagagtcggggtttaaacaaattatatttactctttactctaaaaatgt |
40961027 |
T |
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| Q |
308 |
agtagactctttcaacggagcagtacatggtcaatctcgttaggttctattctatctaaatctcatagcattttatcgtcgtttttaataactcttatat |
407 |
Q |
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|||||||| ||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40961026 |
agtagactttttcaacggagcagtgcatggtcaatctctttaggttctattttatctaaatctcatagcattttattgtcgtttttaataactcttatat |
40960927 |
T |
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| Q |
408 |
taagttctttagaagagaagttaatatagttgttcataatttggcaaaagtggcaatatat |
468 |
Q |
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| T |
40960926 |
tgagttctttagaagagaagttaatatagttgttcataatctggcaaaagtggcaatatat |
40960866 |
T |
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