View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8766_low_1 (Length: 546)
Name: NF8766_low_1
Description: NF8766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8766_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 171 - 528
Target Start/End: Original strand, 9150592 - 9150949
Alignment:
| Q |
171 |
tttaatgagacttgaacacatgactacacactcaatgatgcctggccacgccatataaccgctgtgaacagatagaaacatatnnnnnnngtattttggg |
270 |
Q |
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| T |
9150592 |
tttagtgagacttgaacacataactacacactcaatgatgactagccacgccatataaccgctgtgaacagatagaaacatataaaaaaagtattttggg |
9150691 |
T |
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| Q |
271 |
tctcaaaaaatttgagactcaatggtatggcccaacctcgatgggctatggaccggccctgataacgatgaggaatatccctatggtgagaaatgtggcc |
370 |
Q |
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| T |
9150692 |
tctcaaaaaatttgaggctcagtggtatagcccaacctcgacgggcaatggaccggccctgataatgatgaggaatatccctatggtgagaaatgtagcc |
9150791 |
T |
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| Q |
371 |
ttcttaatgaggacccttctaggtttagggataatttttagaaattaagagattgttctgcaataaacatcgaaattattggttctccaaagtcatttag |
470 |
Q |
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| T |
9150792 |
ttcttaatgagggcccttctaggtttagggataattttaagaaattaagagattgttctgcaataaacatcgaaattattggttctccaaagtcatttag |
9150891 |
T |
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| Q |
471 |
ggctggtctaatatttagaatccaatatggatttgaacaatctatcaaggggaattcc |
528 |
Q |
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| T |
9150892 |
agctggtctaatatttagaatccaatatggatttgagcaatctatcaaggggaattcc |
9150949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 9150432 - 9150541
Alignment:
| Q |
10 |
attattctcaagatgaagttgtgcaagaagtatataatgatcaggtcatcttaacaaattcataggcctagttttagttttataaaatatgtaaacaaat |
109 |
Q |
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| T |
9150432 |
attattctcaagatgaagttgtgcaagaagtatataatgatcaggtcatcttaacaaattcataggcctagttttagttttataaaatatgtaaacaaat |
9150531 |
T |
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| Q |
110 |
ttatatcctc |
119 |
Q |
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| T |
9150532 |
ttatatcctc |
9150541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 52722340 - 52722376
Alignment:
| Q |
58 |
tcttaacaaattcataggcctagttttagttttataa |
94 |
Q |
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| T |
52722340 |
tcttaacaaattcataggcccagttttaattttataa |
52722376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 464
Target Start/End: Original strand, 46899012 - 46899137
Alignment:
| Q |
339 |
tgaggaatatccctatggtgagaaatgtggccttcttaatgaggacccttctaggtttagggataatttttagaaattaagagattgttctgcaataaac |
438 |
Q |
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| T |
46899012 |
tgaggaatgtccttatggtgataagtgtagctttcttcatgaggatcctgctaggtttagggatgcttcttggaaaacaagagagtgttctgcaataagc |
46899111 |
T |
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| Q |
439 |
atcgaaattattggttctccaaagtc |
464 |
Q |
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| T |
46899112 |
gttggaaatattggttctccaaagtc |
46899137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 12131262 - 12131298
Alignment:
| Q |
58 |
tcttaacaaattcataggcctagttttagttttataa |
94 |
Q |
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| T |
12131262 |
tcttaacaaattcataggcccagttttaattttataa |
12131298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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