View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8766_low_3 (Length: 400)
Name: NF8766_low_3
Description: NF8766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8766_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 39146563 - 39146178
Alignment:
| Q |
1 |
gttgcggcaaaggaggaagtaaaacaggctgttgcagatgatctaaactcaactcattcatcaccttgtgaatggttcatctgtgatgataaccagagtg |
100 |
Q |
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| T |
39146563 |
gttgcggcaaaggaggaagtaaaacaggctgttgcagatgatctaaactcaactcattcatcaccttgtgaatggttcatctgtgatgataaccagagtg |
39146464 |
T |
|
| Q |
101 |
gtacaagattttttgttattcaggtaggggagatcaannnnnnnnnnnnngctatataagttatactcattggttgcagctagtaagttgttatttgtga |
200 |
Q |
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| T |
39146463 |
gtacaagattttttgttattcaggtaggggagatcaatttttgttcttttgctatataagttatactcattggttgcagctagtaagttgttatttgtga |
39146364 |
T |
|
| Q |
201 |
ccgctaaaatttgataaaacgttattatgtagggttcggagtcattagcatcttggcaagcaaacctactttttgagccaattaaatttgaggtaattgc |
300 |
Q |
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| T |
39146363 |
ccgctaaaatttgataaaacgttattatgtagggttcggagtcattagcatcttggcaagcaaacctactttttgagccaattaaatttgaggtaattgc |
39146264 |
T |
|
| Q |
301 |
cgatattgcagactaagtttttcttgtaact-ttgtcaaaggaaattttgctttttacaggatgaataaataatttaattttgaac |
385 |
Q |
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| T |
39146263 |
cgatattgcagactaagtttttcttgtaactattgtcaaaggaaattttgctttttacaggatgaataaataatttaattttgaac |
39146178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 299
Target Start/End: Original strand, 44695588 - 44695661
Alignment:
| Q |
226 |
tatgtagggttcggagtcattagcatcttggcaagcaaacctactttttgagccaattaaatttgaggtaattg |
299 |
Q |
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| T |
44695588 |
tatgcagggttcagagtcatttgaatcctggcaggcaaacctactttttgagccagttcaatttgaggtaattg |
44695661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 44695304 - 44695392
Alignment:
| Q |
1 |
gttgcggcaaaggaggaagtaaaacaggctgttgcagatgatctaaactcaactcattcatcaccttgtgaatggttcatctgtgatga |
89 |
Q |
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| T |
44695304 |
gttgccgcaaatgaggaagtaaaacaatcttttgcagatgatttaaactcaacaagttcttcaccctgtgaatggttcatatgcgatga |
44695392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 48450964 - 48451029
Alignment:
| Q |
231 |
agggttcggagtcattagcatcttggcaagcaaacctactttttgagccaattaaatttgaggtaa |
296 |
Q |
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||||||| || || ||||||||||||||||||||||| | |||||||| | |||||||||||||| |
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| T |
48450964 |
agggttcagactccttagcatcttggcaagcaaacctcttctttgagcctactaaatttgaggtaa |
48451029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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