View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8766_low_5 (Length: 340)
Name: NF8766_low_5
Description: NF8766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8766_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 853541 - 853822
Alignment:
| Q |
17 |
ttaaccagggattcaaccaaagctctcaaaccaggagcatcaataccatcatcgtttgttatcagaattgttcctagcttaccctcatcatccatctcca |
116 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
853541 |
ttaacgagggattcaaccaaagctctcaaaccaggagcatcaataccatcatcgtttgttatcagaattgttcctagcttaccctcatcatccatctcca |
853640 |
T |
|
| Q |
117 |
aagttgctgtatcacttgtcatcaacacctatgcaattttacttgtatatattccatcattttgatatatttggtccacaccaaatttttaaataaagaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
853641 |
aagttgctgtatcacttgtcatcaacacctatgcaattttacttgtatatattccatcattttgatatatttggtccacaccaaatttttaaataaagaa |
853740 |
T |
|
| Q |
217 |
taataccttgggtcttttttaaatacataccacctaacctaatgtcttttcttaataaagaaatgctacatcaagttaatata |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
853741 |
aaataccttgggtcttttttaaatacataccacctaacc-aatgtcttttcttaataaagaaatgctacatcaagttaatata |
853822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University