View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8766_low_7 (Length: 312)

Name: NF8766_low_7
Description: NF8766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8766_low_7
NF8766_low_7
[»] scaffold0003 (1 HSPs)
scaffold0003 (18-169)||(360375-360526)
[»] chr6 (6 HSPs)
chr6 (248-288)||(24319027-24319067)
chr6 (248-288)||(23610335-23610375)
chr6 (254-288)||(17534867-17534901)
chr6 (248-288)||(30938402-30938442)
chr6 (248-288)||(32388240-32388280)
chr6 (251-283)||(34268299-34268331)
[»] chr4 (10 HSPs)
chr4 (248-288)||(26250661-26250701)
chr4 (252-288)||(23924888-23924924)
chr4 (248-288)||(33933755-33933795)
chr4 (248-288)||(45139897-45139937)
chr4 (248-288)||(51890811-51890851)
chr4 (248-284)||(624494-624530)
chr4 (252-288)||(11294854-11294890)
chr4 (252-288)||(29406375-29406411)
chr4 (250-286)||(42002322-42002358)
chr4 (248-284)||(50279060-50279096)
[»] chr3 (15 HSPs)
chr3 (248-288)||(32776225-32776265)
chr3 (248-288)||(38949688-38949728)
chr3 (248-288)||(4227760-4227800)
chr3 (248-284)||(4236999-4237035)
chr3 (248-288)||(19222602-19222642)
chr3 (248-288)||(24303404-24303444)
chr3 (248-284)||(44764736-44764772)
chr3 (248-284)||(49375701-49375737)
chr3 (248-287)||(36763443-36763482)
chr3 (248-283)||(48515406-48515441)
chr3 (251-284)||(3614100-3614133)
chr3 (248-284)||(20887789-20887825)
chr3 (248-288)||(32401505-32401545)
chr3 (252-288)||(43280086-43280122)
chr3 (248-288)||(45118654-45118694)
[»] chr2 (7 HSPs)
chr2 (248-288)||(32190018-32190058)
chr2 (248-285)||(14663998-14664035)
chr2 (248-284)||(2145755-2145791)
chr2 (248-288)||(20919624-20919664)
chr2 (250-284)||(4858721-4858755)
chr2 (252-288)||(1964371-1964407)
chr2 (248-288)||(23405210-23405250)
[»] chr1 (13 HSPs)
chr1 (248-288)||(36666592-36666632)
chr1 (248-287)||(11333678-11333717)
chr1 (248-287)||(11491699-11491738)
chr1 (248-284)||(8741487-8741523)
chr1 (248-288)||(23991280-23991320)
chr1 (248-287)||(24874152-24874191)
chr1 (250-284)||(18607829-18607863)
chr1 (248-284)||(2997677-2997713)
chr1 (248-288)||(25036278-25036318)
chr1 (248-288)||(25041490-25041530)
chr1 (248-288)||(31124654-31124694)
chr1 (248-288)||(45416194-45416234)
chr1 (248-284)||(47469093-47469129)
[»] chr8 (13 HSPs)
chr8 (248-286)||(481025-481063)
chr8 (248-288)||(12770382-12770422)
chr8 (248-283)||(18412570-18412605)
chr8 (250-288)||(25890420-25890458)
chr8 (252-286)||(42877052-42877086)
chr8 (248-281)||(17499113-17499146)
chr8 (248-281)||(22202727-22202760)
chr8 (248-288)||(11231434-11231474)
chr8 (248-284)||(13059197-13059233)
chr8 (248-288)||(15856522-15856562)
chr8 (248-288)||(20894714-20894754)
chr8 (248-288)||(31260961-31261001)
chr8 (248-288)||(38283138-38283178)
[»] chr7 (9 HSPs)
chr7 (250-287)||(23274831-23274868)
chr7 (247-283)||(44831642-44831678)
chr7 (248-282)||(7876013-7876047)
chr7 (248-285)||(47542995-47543032)
chr7 (248-284)||(4611253-4611289)
chr7 (252-284)||(27425106-27425138)
chr7 (248-284)||(28800041-28800077)
chr7 (248-288)||(36931987-36932027)
chr7 (248-288)||(41331095-41331135)
[»] chr5 (5 HSPs)
chr5 (248-288)||(5555361-5555401)
chr5 (248-281)||(28758441-28758474)
chr5 (248-284)||(6167224-6167260)
chr5 (248-284)||(39800050-39800086)
chr5 (248-288)||(41083553-41083593)
[»] scaffold0250 (1 HSPs)
scaffold0250 (248-283)||(15019-15054)
[»] scaffold0519 (1 HSPs)
scaffold0519 (248-288)||(2978-3018)
[»] scaffold0154 (1 HSPs)
scaffold0154 (248-288)||(28837-28877)
[»] scaffold0002 (1 HSPs)
scaffold0002 (248-288)||(8841-8881)


Alignment Details
Target: scaffold0003 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 360375 - 360526
Alignment:
18 atcactaaaccaaactaagataagtcttttaatcactacatcaaaccctaagttttattcaggctgtctatatcaaacccaaactgatcaaggggagcaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||  |||||||||||||    
360375 atcactaaaccaaactaagataagtcttttaatcactacatcaaaccctaagttttattctggttgtctatatcaaacccaaacttctcaaggggagcaa 360474  T
118 gaaagcgaaaaacagaaactacaaggcctttgccaccggagaaggcgaaacc 169  Q
    |||||||||||||||||||||||||||||| ||||||  |||||||||||||    
360475 gaaagcgaaaaacagaaactacaaggccttcgccaccacagaaggcgaaacc 360526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 24319027 - 24319067
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||||||||||||| ||||||||||||||||||||||    
24319027 tcagttggtagggacattgcataatttatgcaggggccggg 24319067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 23610375 - 23610335
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||||||||||||| ||||||||||||||||| ||||    
23610375 tcagttggtagggacattgcataatttatgcaggggtcggg 23610335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 288
Target Start/End: Original strand, 17534867 - 17534901
Alignment:
254 ggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||||||| ||||||||||||||||||||||    
17534867 ggtagggacattgcataatttatgcaggggccggg 17534901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 30938402 - 30938442
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||||||||||||| |||||| ||||||||| |||||    
30938402 tcagttggtagggacattgcataatatatgcagggaccggg 30938442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 32388240 - 32388280
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    ||||||| |||||||||| ||||||||||||||||| ||||    
32388240 tcagttgatagggacattgcataatttatgcaggggtcggg 32388280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 283
Target Start/End: Original strand, 34268299 - 34268331
Alignment:
251 gttggtagggacattccataatttatgcagggg 283  Q
    ||||||||||||||| |||||||||||||||||    
34268299 gttggtagggacattgcataatttatgcagggg 34268331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 26250661 - 26250701
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||||||||||||| ||||||||||||||||||||||    
26250661 tcagttggtagggacattgcataatttatgcaggggccggg 26250701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 23924924 - 23924888
Alignment:
252 ttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||||||||| ||||||||||||||||||||||    
23924924 ttggtagggacattgcataatttatgcaggggccggg 23924888  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 33933795 - 33933755
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||||||||||||| |||||| |||||||||||||||    
33933795 tcagttggtagggacattgcataatatatgcaggggccggg 33933755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 45139937 - 45139897
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    ||||||||||||||||||  |||||||||||||||||||||    
45139937 tcagttggtagggacattgtataatttatgcaggggccggg 45139897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 51890811 - 51890851
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||| ||||||||| ||||||||||||||||||||||    
51890811 tcagttggcagggacattgcataatttatgcaggggccggg 51890851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 624494 - 624530
Alignment:
248 tcagttggtagggacattccataatttatgcaggggc 284  Q
    |||||||||| ||||||| ||||||||||||||||||    
624494 tcagttggtaaggacattgcataatttatgcaggggc 624530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 11294890 - 11294854
Alignment:
252 ttggtagggacattccataatttatgcaggggccggg 288  Q
    |||| ||||||||| ||||||||||||||||||||||    
11294890 ttggcagggacattgcataatttatgcaggggccggg 11294854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 29406375 - 29406411
Alignment:
252 ttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||||||||| ||||||||||||||||| ||||    
29406375 ttggtagggacattgcataatttatgcaggggtcggg 29406411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 42002322 - 42002358
Alignment:
250 agttggtagggacattccataatttatgcaggggccg 286  Q
    |||||||||||||||| ||||||||||| ||||||||    
42002322 agttggtagggacattgcataatttatgtaggggccg 42002358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 50279096 - 50279060
Alignment:
248 tcagttggtagggacattccataatttatgcaggggc 284  Q
    |||||||||||||||||| ||||||||||||| ||||    
50279096 tcagttggtagggacattgcataatttatgcaagggc 50279060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 32776225 - 32776265
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||||||||||||| ||||||||||||||||||||||    
32776225 tcagttggtagggacattgcataatttatgcaggggccggg 32776265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 38949688 - 38949728
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||||||||||||| ||||||||||||||||||||||    
38949688 tcagttggtagggacattgcataatttatgcaggggccggg 38949728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 4227800 - 4227760
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||||||||||||| ||||||||||||||||| ||||    
4227800 tcagttggtagggacattgcataatttatgcaggggtcggg 4227760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 4237035 - 4236999
Alignment:
248 tcagttggtagggacattccataatttatgcaggggc 284  Q
    |||||||||||||||||| ||||||||||||||||||    
4237035 tcagttggtagggacattgcataatttatgcaggggc 4236999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 19222642 - 19222602
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||| ||||||||| ||||||||||||||||||||||    
19222642 tcagttggcagggacattgcataatttatgcaggggccggg 19222602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 24303404 - 24303444
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||| ||||||||| ||||||||||||||||||||||    
24303404 tcagttggcagggacattgcataatttatgcaggggccggg 24303444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 44764736 - 44764772
Alignment:
248 tcagttggtagggacattccataatttatgcaggggc 284  Q
    |||||||||||||||||| ||||||||||||||||||    
44764736 tcagttggtagggacattgcataatttatgcaggggc 44764772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 49375737 - 49375701
Alignment:
248 tcagttggtagggacattccataatttatgcaggggc 284  Q
    |||||||||||||||||| ||||||||||||||||||    
49375737 tcagttggtagggacattacataatttatgcaggggc 49375701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 36763443 - 36763482
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccgg 287  Q
    |||||||||||||||||| |||||| ||||||||||||||    
36763443 tcagttggtagggacattgcataatatatgcaggggccgg 36763482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 283
Target Start/End: Complemental strand, 48515441 - 48515406
Alignment:
248 tcagttggtagggacattccataatttatgcagggg 283  Q
    |||||||||||||| |||||||||||||||||||||    
48515441 tcagttggtagggatattccataatttatgcagggg 48515406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 3614133 - 3614100
Alignment:
251 gttggtagggacattccataatttatgcaggggc 284  Q
    ||||||||||||||| ||||||||||||||||||    
3614133 gttggtagggacattgcataatttatgcaggggc 3614100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 20887825 - 20887789
Alignment:
248 tcagttggtagggacattccataatttatgcaggggc 284  Q
    |||||||||||||| ||| ||||||||||||||||||    
20887825 tcagttggtagggatattgcataatttatgcaggggc 20887789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 32401505 - 32401545
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    ||||||||||||||||||  |||||||||||||||| ||||    
32401505 tcagttggtagggacattgtataatttatgcaggggtcggg 32401545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 43280086 - 43280122
Alignment:
252 ttggtagggacattccataatttatgcaggggccggg 288  Q
    |||| ||||||||| ||||||||||||||||||||||    
43280086 ttggcagggacattgcataatttatgcaggggccggg 43280122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 45118654 - 45118694
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||||||||||||| ||| || |||||||||||||||    
45118654 tcagttggtagggacattgcattatatatgcaggggccggg 45118694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 32190058 - 32190018
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||||||||||||| ||||||||||||||||||||||    
32190058 tcagttggtagggacattgcataatttatgcaggggccggg 32190018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 285
Target Start/End: Original strand, 14663998 - 14664035
Alignment:
248 tcagttggtagggacattccataatttatgcaggggcc 285  Q
    |||||||||||||||||| |||||||||||||||||||    
14663998 tcagttggtagggacattgcataatttatgcaggggcc 14664035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 2145791 - 2145755
Alignment:
248 tcagttggtagggacattccataatttatgcaggggc 284  Q
    |||||||||||||||||| ||||||||||||||||||    
2145791 tcagttggtagggacattgcataatttatgcaggggc 2145755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 20919624 - 20919664
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||||||||||||| |||||||||||| |||||||||    
20919624 tcagttggtagggacattgcataatttatgctggggccggg 20919664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 284
Target Start/End: Complemental strand, 4858755 - 4858721
Alignment:
250 agttggtagggacattccataatttatgcaggggc 284  Q
    |||||||||||||||| ||||||||||||||||||    
4858755 agttggtagggacattgcataatttatgcaggggc 4858721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 1964371 - 1964407
Alignment:
252 ttggtagggacattccataatttatgcaggggccggg 288  Q
    |||| ||||||||| ||||||||||||||||||||||    
1964371 ttggcagggacattgcataatttatgcaggggccggg 1964407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 23405210 - 23405250
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||||||||||||| |||||| |||||||||| ||||    
23405210 tcagttggtagggacattgcataatatatgcaggggtcggg 23405250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 36666632 - 36666592
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||||||||||||| ||||||||||||||||||||||    
36666632 tcagttggtagggacattgcataatttatgcaggggccggg 36666592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 11333678 - 11333717
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccgg 287  Q
    |||||||||||||||||| |||||||||||||||||||||    
11333678 tcagttggtagggacattgcataatttatgcaggggccgg 11333717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 11491699 - 11491738
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccgg 287  Q
    |||||||||||||||||| |||||||||||||||||||||    
11491699 tcagttggtagggacattgcataatttatgcaggggccgg 11491738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 8741487 - 8741523
Alignment:
248 tcagttggtagggacattccataatttatgcaggggc 284  Q
    |||||||||||||||||| ||||||||||||||||||    
8741487 tcagttggtagggacattacataatttatgcaggggc 8741523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 23991320 - 23991280
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||| ||||||||| ||||||||||||||||||||||    
23991320 tcagttggcagggacattgcataatttatgcaggggccggg 23991280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 24874152 - 24874191
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccgg 287  Q
    ||||||| |||||||||| |||||||||||||||||||||    
24874152 tcagttgatagggacattgcataatttatgcaggggccgg 24874191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 284
Target Start/End: Complemental strand, 18607863 - 18607829
Alignment:
250 agttggtagggacattccataatttatgcaggggc 284  Q
    |||||||||||||||| ||||||||||||||||||    
18607863 agttggtagggacattgcataatttatgcaggggc 18607829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 2997713 - 2997677
Alignment:
248 tcagttggtagggacattccataatttatgcaggggc 284  Q
    |||||| ||||||||||| ||||||||||||||||||    
2997713 tcagttagtagggacattgcataatttatgcaggggc 2997677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 25036318 - 25036278
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||| ||| ||||| ||||||||||||||||||||||    
25036318 tcagttggcaggaacattgcataatttatgcaggggccggg 25036278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 25041530 - 25041490
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||| ||| ||||| ||||||||||||||||||||||    
25041530 tcagttggcaggaacattgcataatttatgcaggggccggg 25041490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 31124694 - 31124654
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||| | ||||||| ||||||||||||||||||||||    
31124694 tcagttggcaaggacattgcataatttatgcaggggccggg 31124654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 45416234 - 45416194
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||| ||| ||||| ||||||||||||||||||||||    
45416234 tcagttggcaggaacattgcataatttatgcaggggccggg 45416194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 47469129 - 47469093
Alignment:
248 tcagttggtagggacattccataatttatgcaggggc 284  Q
    |||||||| ||||||||| ||||||||||||||||||    
47469129 tcagttggcagggacattgcataatttatgcaggggc 47469093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 481025 - 481063
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccg 286  Q
    |||||||||||||||||| ||||||||||||||||||||    
481025 tcagttggtagggacattgcataatttatgcaggggccg 481063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 12770382 - 12770422
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    ||||||| |||||||||| ||||||||||||||||||||||    
12770382 tcagttgatagggacattgcataatttatgcaggggccggg 12770422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 283
Target Start/End: Original strand, 18412570 - 18412605
Alignment:
248 tcagttggtagggacattccataatttatgcagggg 283  Q
    |||||||||||||||||| |||||||||||||||||    
18412570 tcagttggtagggacattgcataatttatgcagggg 18412605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 25890458 - 25890420
Alignment:
250 agttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||||||||||| ||||||||||||| ||||||||    
25890458 agttggtagggacattgcataatttatgcaagggccggg 25890420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 286
Target Start/End: Original strand, 42877052 - 42877086
Alignment:
252 ttggtagggacattccataatttatgcaggggccg 286  Q
    |||||||||||||| ||||||||||||||||||||    
42877052 ttggtagggacattgcataatttatgcaggggccg 42877086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 281
Target Start/End: Complemental strand, 17499146 - 17499113
Alignment:
248 tcagttggtagggacattccataatttatgcagg 281  Q
    |||||||||||||||||| |||||||||||||||    
17499146 tcagttggtagggacattgcataatttatgcagg 17499113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 281
Target Start/End: Original strand, 22202727 - 22202760
Alignment:
248 tcagttggtagggacattccataatttatgcagg 281  Q
    |||||||||||||||||| |||||||||||||||    
22202727 tcagttggtagggacattgcataatttatgcagg 22202760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 11231434 - 11231474
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||  ||||||||| ||||||||||||||||||||||    
11231434 tcagttgaaagggacattgcataatttatgcaggggccggg 11231474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 13059233 - 13059197
Alignment:
248 tcagttggtagggacattccataatttatgcaggggc 284  Q
    |||||||||||||||| | ||||||||||||||||||    
13059233 tcagttggtagggacaatgcataatttatgcaggggc 13059197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 15856562 - 15856522
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||||||||||||| |||||||||| ||||| |||||    
15856562 tcagttggtagggacattgcataatttatacagggaccggg 15856522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 20894754 - 20894714
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||| ||||||||| ||||||||||||| ||||||||    
20894754 tcagttggcagggacattgcataatttatgcaagggccggg 20894714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 31261001 - 31260961
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||| |||||| |||||| ||||||||||||||||||||||    
31261001 tcagctggtagcgacattgcataatttatgcaggggccggg 31260961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 38283138 - 38283178
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||| |||||||||  |||||||||||||||||||||    
38283138 tcagttggcagggacattatataatttatgcaggggccggg 38283178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 23274868 - 23274831
Alignment:
250 agttggtagggacattccataatttatgcaggggccgg 287  Q
    |||||||||||||||| |||||||||||||||||||||    
23274868 agttggtagggacattgcataatttatgcaggggccgg 23274831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 44831678 - 44831642
Alignment:
247 atcagttggtagggacattccataatttatgcagggg 283  Q
    ||||||||||||||||||| |||||||||||||||||    
44831678 atcagttggtagggacattgcataatttatgcagggg 44831642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 282
Target Start/End: Original strand, 7876013 - 7876047
Alignment:
248 tcagttggtagggacattccataatttatgcaggg 282  Q
    |||||||||||||||||| ||||||||||||||||    
7876013 tcagttggtagggacattgcataatttatgcaggg 7876047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 47543032 - 47542995
Alignment:
248 tcagttggtagggacattccataatttatgcaggggcc 285  Q
    ||||||||||||| |||| |||||||||||||||||||    
47543032 tcagttggtaggggcattgcataatttatgcaggggcc 47542995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 4611253 - 4611289
Alignment:
248 tcagttggtagggacattccataatttatgcaggggc 284  Q
    |||||||||||||||||| ||||||||||| ||||||    
4611253 tcagttggtagggacattgcataatttatgtaggggc 4611289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 284
Target Start/End: Original strand, 27425106 - 27425138
Alignment:
252 ttggtagggacattccataatttatgcaggggc 284  Q
    |||||||||||||| ||||||||||||||||||    
27425106 ttggtagggacattgcataatttatgcaggggc 27425138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 28800077 - 28800041
Alignment:
248 tcagttggtagggacattccataatttatgcaggggc 284  Q
    |||||||||||||||| | ||||||||||||||||||    
28800077 tcagttggtagggacaatgcataatttatgcaggggc 28800041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 36931987 - 36932027
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||| ||||||||| |||||||||||||||| |||||    
36931987 tcagttggcagggacattgcataatttatgcagggtccggg 36932027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 41331135 - 41331095
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||| ||||||||| ||||||||||||||||| ||||    
41331135 tcagttggcagggacattgcataatttatgcaggggtcggg 41331095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 5555361 - 5555401
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||||||| ||||| ||||||||||||||||||||||    
5555361 tcagttggtaggtacattgcataatttatgcaggggccggg 5555401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 281
Target Start/End: Complemental strand, 28758474 - 28758441
Alignment:
248 tcagttggtagggacattccataatttatgcagg 281  Q
    |||||||||||||||||| |||||||||||||||    
28758474 tcagttggtagggacattgcataatttatgcagg 28758441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 6167224 - 6167260
Alignment:
248 tcagttggtagggacattccataatttatgcaggggc 284  Q
    |||||||| ||||||||| ||||||||||||||||||    
6167224 tcagttggcagggacattgcataatttatgcaggggc 6167260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 39800086 - 39800050
Alignment:
248 tcagttggtagggacattccataatttatgcaggggc 284  Q
    |||||||||||||||| | ||||||||||||||||||    
39800086 tcagttggtagggacaatgcataatttatgcaggggc 39800050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 41083593 - 41083553
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    ||||||||||| |||||| ||||||||||||||||| ||||    
41083593 tcagttggtagagacattgcataatttatgcaggggtcggg 41083553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 283
Target Start/End: Original strand, 15019 - 15054
Alignment:
248 tcagttggtagggacattccataatttatgcagggg 283  Q
    |||||||||||||||||| |||||||||||||||||    
15019 tcagttggtagggacattgcataatttatgcagggg 15054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 3018 - 2978
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||  ||||||||| ||||||||||||||||||||||    
3018 tcagttgaaagggacattgcataatttatgcaggggccggg 2978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 28877 - 28837
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    ||||||| |||||||||| |||| |||||||||||||||||    
28877 tcagttgatagggacattacatactttatgcaggggccggg 28837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 8881 - 8841
Alignment:
248 tcagttggtagggacattccataatttatgcaggggccggg 288  Q
    |||||||||||||| ||| |||| |||||||||||||||||    
8881 tcagttggtagggatattgcatattttatgcaggggccggg 8841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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