View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8766_low_8 (Length: 297)

Name: NF8766_low_8
Description: NF8766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8766_low_8
NF8766_low_8
[»] chr7 (9 HSPs)
chr7 (1-169)||(45703740-45703907)
chr7 (201-297)||(45703643-45703739)
chr7 (185-228)||(4860908-4860951)
chr7 (185-228)||(18411834-18411877)
chr7 (45-103)||(16883228-16883286)
chr7 (185-227)||(21644214-21644256)
chr7 (45-103)||(24263051-24263109)
chr7 (55-103)||(3323139-3323187)
chr7 (55-103)||(25407196-25407244)
[»] chr3 (10 HSPs)
chr3 (171-222)||(40771336-40771387)
chr3 (55-103)||(22624330-22624378)
chr3 (45-103)||(8515395-8515453)
chr3 (45-103)||(32478641-32478699)
chr3 (46-103)||(2673949-2674006)
chr3 (55-104)||(54190290-54190339)
chr3 (55-103)||(6305093-6305141)
chr3 (55-103)||(10097157-10097205)
chr3 (55-103)||(10204043-10204091)
chr3 (55-103)||(10611128-10611176)
[»] chr6 (4 HSPs)
chr6 (45-103)||(33332804-33332862)
chr6 (55-103)||(35204414-35204462)
chr6 (46-103)||(14739301-14739358)
chr6 (55-103)||(13880521-13880569)
[»] chr1 (3 HSPs)
chr1 (168-214)||(36295363-36295409)
chr1 (55-103)||(2397574-2397622)
chr1 (55-103)||(9523510-9523558)
[»] chr5 (7 HSPs)
chr5 (185-228)||(24557452-24557495)
chr5 (185-228)||(24598484-24598527)
chr5 (185-227)||(27448000-27448042)
chr5 (45-103)||(31398720-31398778)
chr5 (185-227)||(43595298-43595340)
chr5 (185-227)||(43628092-43628134)
chr5 (45-101)||(33789659-33789715)
[»] scaffold0197 (1 HSPs)
scaffold0197 (45-103)||(16037-16095)
[»] chr8 (5 HSPs)
chr8 (45-103)||(10685992-10686050)
chr8 (185-227)||(26299550-26299592)
chr8 (45-103)||(35743690-35743748)
chr8 (55-103)||(16755611-16755659)
chr8 (55-103)||(28329677-28329725)
[»] chr4 (1 HSPs)
chr4 (178-228)||(47745865-47745914)
[»] chr2 (6 HSPs)
chr2 (45-103)||(19347579-19347637)
chr2 (185-227)||(25394063-25394105)
chr2 (55-103)||(2737987-2738035)
chr2 (55-103)||(20053111-20053159)
chr2 (55-103)||(39684030-39684078)
chr2 (55-103)||(45569172-45569220)
[»] scaffold0078 (1 HSPs)
scaffold0078 (185-226)||(35188-35229)
[»] scaffold0023 (1 HSPs)
scaffold0023 (55-103)||(49557-49605)


Alignment Details
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 45703907 - 45703740
Alignment:
Q  1 attttatgataattgcatattaaagaaacaacatacatttaagtaagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  45703907 attttatgataattgcatattaaagaaacaacatacatttaagtaagtgacattcataattctagtagaccttttgaatatgttcgttcaaa-ctttggg 45703809  T
Q  101 gtctgacaatagcaacatatcttgacaatagtttctatttgctcattatgattgatgatttcttagaaa 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45703808 gtctgacaatagcaacatatcttgacaatagtttctatttgctcattatgattgatgatttcttagaaa 45703740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 201 - 297
Target Start/End: Complemental strand, 45703739 - 45703643
Alignment:
Q  201 tgacacctttaaaaagtttaaggaatgatgtattcttatagagaatcactcataaactaaattgaaagtattaagaactaacaacgacctcaagttt 297  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45703739 tgacacctttaaaaagtttaaggaatgatatattcttatagagaatcactcagaaactaaattgaaagtattaagaactaacaacgacctcaagttt 45703643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 4860951 - 4860908
Alignment:
Q  185 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatga 228  Q
    |||||||||| ||||||||||| ||| |||||||||||||||||    
T  4860951 ttttgaaaaacaaaagtgacacatttgaaaagtttaaggaatga 4860908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 18411877 - 18411834
Alignment:
Q  185 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatga 228  Q
    |||||||||| ||||||||||| ||| |||||||||||||||||    
T  18411877 ttttgaaaaaaaaaagtgacacattttaaaagtttaaggaatga 18411834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 16883286 - 16883228
Alignment:
Q  45 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  16883286 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 16883228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 21644256 - 21644214
Alignment:
Q  185 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatg 227  Q
    |||||||||| ||||||||||| ||| ||||||||||||||||    
T  21644256 ttttgaaaaacaaaagtgacacatttgaaaagtttaaggaatg 21644214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 24263051 - 24263109
Alignment:
Q  45 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  24263051 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 24263109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 3323187 - 3323139
Alignment:
Q  55 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  3323187 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 3323139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 25407196 - 25407244
Alignment:
Q  55 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  25407196 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 25407244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 40771387 - 40771336
Alignment:
Q  171 agtatgagttcatattttgaaaaataaaagtgacacctttaaaaagtttaag 222  Q
    |||||||||||||||||||||| ||||||||||||| ||| |||||||||||    
T  40771387 agtatgagttcatattttgaaacataaaagtgacacatttgaaaagtttaag 40771336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 22624378 - 22624330
Alignment:
Q  55 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    ||||| |||||||| |||||||||||||||| |||| ||||||||||||    
T  22624378 cataaatctagtaggccttttgagtatgttcattcagatctttggggtc 22624330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 8515453 - 8515395
Alignment:
Q  45 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  8515453 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 8515395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 32478699 - 32478641
Alignment:
Q  45 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  32478699 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 32478641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 2673949 - 2674006
Alignment:
Q  46 agtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    |||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  2673949 agtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 2674006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 54190290 - 54190339
Alignment:
Q  55 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtct 104  Q
    ||||| |||||||| |||||||||||||||| |||  |||||||||||||    
T  54190290 cataaatctagtaggccttttgagtatgttcattcggatctttggggtct 54190339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 6305093 - 6305141
Alignment:
Q  55 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  6305093 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 6305141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 10097205 - 10097157
Alignment:
Q  55 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  10097205 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 10097157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 10204091 - 10204043
Alignment:
Q  55 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  10204091 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 10204043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 10611176 - 10611128
Alignment:
Q  55 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  10611176 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 10611128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 33332804 - 33332862
Alignment:
Q  45 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||| ||||||||||||    
T  33332804 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcagatctttggggtc 33332862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 35204462 - 35204414
Alignment:
Q  55 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    ||||| ||||||||||||||||||||||||| |||  ||||||||||||    
T  35204462 cataaatctagtagaccttttgagtatgttcattcggatctttggggtc 35204414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 14739301 - 14739358
Alignment:
Q  46 agtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    |||| ||| ||| |||||||||| |||||||||||||| | |||| ||||||||||||    
T  14739301 agtggcatgcatcattctagtaggccttttgagtatgtgcattcagatctttggggtc 14739358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 13880521 - 13880569
Alignment:
Q  55 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  13880521 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 13880569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 36295363 - 36295409
Alignment:
Q  168 aagagtatgagttcatattttgaaaaataaaagtgacacctttaaaa 214  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||||||    
T  36295363 aagagtatgagttcacattttaaaacataaaagtgacacctttaaaa 36295409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 2397622 - 2397574
Alignment:
Q  55 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  2397622 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 2397574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 9523510 - 9523558
Alignment:
Q  55 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  9523510 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 9523558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 24557452 - 24557495
Alignment:
Q  185 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatga 228  Q
    |||||||||| ||||||||||||||| | |||||||||||||||    
T  24557452 ttttgaaaaacaaaagtgacacctttgagaagtttaaggaatga 24557495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 24598484 - 24598527
Alignment:
Q  185 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatga 228  Q
    |||||||||| ||||||||||||||| | |||||||||||||||    
T  24598484 ttttgaaaaacaaaagtgacacctttgagaagtttaaggaatga 24598527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 27448042 - 27448000
Alignment:
Q  185 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatg 227  Q
    |||||||||| ||||||||||||||| |||||||||| |||||    
T  27448042 ttttgaaaaacaaaagtgacacctttgaaaagtttaaagaatg 27448000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 31398720 - 31398778
Alignment:
Q  45 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  31398720 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 31398778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 43595340 - 43595298
Alignment:
Q  185 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatg 227  Q
    |||||||||| ||||||||||||||| |||||||||| |||||    
T  43595340 ttttgaaaaacaaaagtgacacctttgaaaagtttaaagaatg 43595298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 43628134 - 43628092
Alignment:
Q  185 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatg 227  Q
    |||||||||| ||||||||||||||| |||||||||| |||||    
T  43628134 ttttgaaaaacaaaagtgacacctttgaaaagtttaaagaatg 43628092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 33789715 - 33789659
Alignment:
Q  45 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttgggg 101  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||    
T  33789715 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttgggg 33789659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 16037 - 16095
Alignment:
Q  45 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  16037 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 16095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 10685992 - 10686050
Alignment:
Q  45 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  10685992 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 10686050  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 26299592 - 26299550
Alignment:
Q  185 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatg 227  Q
    |||||||||| ||||||||||| ||| ||||||||||||||||    
T  26299592 ttttgaaaaacaaaagtgacacatttgaaaagtttaaggaatg 26299550  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 35743748 - 35743690
Alignment:
Q  45 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  35743748 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 35743690  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 16755659 - 16755611
Alignment:
Q  55 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  16755659 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 16755611  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 28329677 - 28329725
Alignment:
Q  55 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  28329677 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 28329725  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 47745865 - 47745914
Alignment:
Q  178 gttcatattttgaaaaataaaagtgacacctttaaaaagtttaaggaatga 228  Q
    ||||| ||||||||||||||| ||||||| ||| |||||||||||||||||    
T  47745865 gttcacattttgaaaaataaa-gtgacacatttgaaaagtttaaggaatga 47745914  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 19347637 - 19347579
Alignment:
Q  45 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  19347637 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 19347579  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 25394105 - 25394063
Alignment:
Q  185 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatg 227  Q
    |||||||||| ||||||||||| ||| ||||||||||||||||    
T  25394105 ttttgaaaaacaaaagtgacacatttgaaaagtttaaggaatg 25394063  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 2737987 - 2738035
Alignment:
Q  55 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  2737987 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 2738035  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 20053159 - 20053111
Alignment:
Q  55 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  20053159 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 20053111  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 39684030 - 39684078
Alignment:
Q  55 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  39684030 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 39684078  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 45569172 - 45569220
Alignment:
Q  55 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  45569172 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 45569220  T

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Target: scaffold0078 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 35229 - 35188
Alignment:
Q  185 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaat 226  Q
    |||| ||||| ||||||||||||||||| |||||||||||||    
T  35229 ttttaaaaaacaaaagtgacacctttaataagtttaaggaat 35188  T

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Target: scaffold0023 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 49605 - 49557
Alignment:
Q  55 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 103  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  49605 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 49557  T

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