View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8767_high_1 (Length: 403)
Name: NF8767_high_1
Description: NF8767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8767_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 24634745 - 24634355
Alignment:
| Q |
1 |
tcatacatcaagattaaaataatacatatgacgatccacatattaatccaacatttgtcgaaaattagaaacacaattacattttaaacccagcagtaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24634745 |
tcatacatcaagattaaaataatacatatgacgatccacatattaatccaacatttgttgaaaattagaaacacaattacattttaaacccagcagtaac |
24634646 |
T |
|
| Q |
101 |
acatacacagtttgtgttgaaaccttgaaatttacttataaaagtttacaattgaaacataaattagaagatcctgtttactagttagctattgttcctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
24634645 |
acatacacagtttgtgttgaaaccttgaaatttacttatagaagtttacaattgaaacataaattagaagatcctgtttactacttaactattgttcctt |
24634546 |
T |
|
| Q |
201 |
gttatcttcttcactttcatatagactgatgtataaataaggtccattgagttcattatgatcaattcatcacgttatcaataaatgagacatttcattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24634545 |
gttatcttcttcactttcatatagactgatgtataaataaggtccattgagttcattatgatcaattcatcaagttatcaataaatgagacatttcattt |
24634446 |
T |
|
| Q |
301 |
acaagaaatcagaactaggcttttgtaagacttgtttccagcaataaaacacaataatctttagatacacatgtttaaccttcattttcat |
391 |
Q |
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| T |
24634445 |
acaagaaatcagaactaggctcttgtaagacttgtttccagcaataaaacacaataatctttagatacacatgtttaaccttcattttcat |
24634355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 24628559 - 24628511
Alignment:
| Q |
117 |
ttgaaaccttgaaatttacttataaaagtttacaatt-gaaacataaat |
164 |
Q |
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| T |
24628559 |
ttgaaaccttgaaatttacttataaaagtttacaattagaaacataaat |
24628511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 152
Target Start/End: Original strand, 42542330 - 42542372
Alignment:
| Q |
110 |
gtttgtgttgaaaccttgaaatttacttataaaagtttacaat |
152 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
42542330 |
gtttctgttgaaaccttgaaatttacttataaatgtttacaat |
42542372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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