View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8767_high_6 (Length: 251)

Name: NF8767_high_6
Description: NF8767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8767_high_6
NF8767_high_6
[»] chr6 (5 HSPs)
chr6 (16-110)||(10025044-10025138)
chr6 (146-188)||(3800696-3800738)
chr6 (146-188)||(23633252-23633294)
chr6 (147-188)||(3821506-3821547)
chr6 (147-188)||(7693417-7693458)
[»] scaffold0504 (1 HSPs)
scaffold0504 (121-186)||(10637-10702)
[»] chr3 (11 HSPs)
chr3 (120-188)||(3484859-3484927)
chr3 (146-188)||(622386-622428)
chr3 (147-188)||(11233959-11234000)
chr3 (120-184)||(24748705-24748769)
chr3 (146-188)||(44334728-44334770)
chr3 (147-188)||(35425600-35425641)
chr3 (119-156)||(44334689-44334726)
chr3 (146-188)||(39932245-39932287)
chr3 (147-188)||(28300574-28300615)
chr3 (119-156)||(39932289-39932326)
chr3 (120-188)||(38692227-38692295)
[»] chr2 (8 HSPs)
chr2 (120-188)||(34261913-34261981)
chr2 (119-186)||(25994205-25994272)
chr2 (146-188)||(546312-546354)
chr2 (146-187)||(6666123-6666164)
chr2 (146-188)||(7497918-7497960)
chr2 (119-188)||(44411037-44411106)
chr2 (120-156)||(7497880-7497916)
chr2 (146-188)||(7687854-7687896)
[»] scaffold0111 (2 HSPs)
scaffold0111 (146-188)||(36795-36837)
scaffold0111 (120-156)||(36757-36793)
[»] chr8 (11 HSPs)
chr8 (146-188)||(41304909-41304951)
chr8 (120-156)||(29910101-29910137)
chr8 (146-188)||(29910139-29910181)
chr8 (147-188)||(5642318-5642359)
chr8 (147-188)||(5644259-5644300)
chr8 (136-184)||(27055279-27055327)
chr8 (145-188)||(5782890-5782933)
chr8 (147-188)||(324008-324049)
chr8 (119-184)||(20683633-20683698)
chr8 (151-184)||(41005870-41005903)
chr8 (147-188)||(45081169-45081210)
[»] chr5 (9 HSPs)
chr5 (146-188)||(42825216-42825258)
chr5 (147-188)||(33743261-33743302)
chr5 (147-188)||(34952333-34952374)
chr5 (147-188)||(39840631-39840672)
chr5 (145-188)||(6865713-6865756)
chr5 (151-188)||(9277543-9277580)
chr5 (147-188)||(42807410-42807451)
chr5 (147-187)||(20125493-20125533)
chr5 (120-184)||(32682046-32682110)
[»] chr1 (15 HSPs)
chr1 (146-188)||(33422146-33422188)
chr1 (146-188)||(44112556-44112598)
chr1 (120-156)||(24775121-24775157)
chr1 (146-184)||(44641830-44641868)
chr1 (120-176)||(47279772-47279829)
chr1 (147-188)||(51250219-51250260)
chr1 (124-188)||(11011888-11011952)
chr1 (120-156)||(39220341-39220377)
chr1 (146-176)||(49589899-49589929)
chr1 (147-188)||(4511705-4511746)
chr1 (147-188)||(30530327-30530368)
chr1 (147-188)||(31184383-31184424)
chr1 (147-188)||(40139215-40139256)
chr1 (147-188)||(44950349-44950390)
chr1 (136-188)||(26214108-26214160)
[»] chr7 (8 HSPs)
chr7 (119-188)||(44817792-44817861)
chr7 (147-188)||(5724140-5724181)
chr7 (147-188)||(30391248-30391289)
chr7 (120-169)||(31364787-31364837)
chr7 (147-188)||(27070597-27070638)
chr7 (147-188)||(27207675-27207716)
chr7 (147-188)||(47644811-47644852)
chr7 (147-184)||(49089092-49089129)
[»] chr4 (8 HSPs)
chr4 (147-188)||(31147333-31147374)
chr4 (119-188)||(46912699-46912768)
chr4 (149-188)||(1688358-1688397)
chr4 (126-188)||(51397765-51397827)
chr4 (147-188)||(4514193-4514234)
chr4 (147-188)||(10096670-10096711)
chr4 (120-152)||(1688317-1688349)
chr4 (120-188)||(19315008-19315076)
[»] scaffold0238 (2 HSPs)
scaffold0238 (120-156)||(16537-16573)
scaffold0238 (146-188)||(16493-16535)
[»] scaffold0057 (1 HSPs)
scaffold0057 (149-187)||(21504-21542)
[»] scaffold0194 (1 HSPs)
scaffold0194 (147-188)||(29738-29779)
[»] scaffold0024 (1 HSPs)
scaffold0024 (147-188)||(60569-60610)
[»] scaffold0020 (1 HSPs)
scaffold0020 (147-188)||(156008-156049)


Alignment Details
Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 10025044 - 10025138
Alignment:
Q  16 cagtgttagttgatgcacaaggcgacatgcttgacaacatagaatcacaggtatttttcatcactttgcacataacgccatcatcgaatcaggat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10025044 cagtgttagttgatgcacaaggcgacatgcttgacaacatagaatcacaggtatttttcatcactttgcacataacgccatcatcgaatcaggat 10025138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 3800738 - 3800696
Alignment:
Q  146 ttgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||| ||||||||||||||||||| |||||||||||    
T  3800738 ttgacaactttcattttctctcttctcattggtccaaaacaat 3800696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 23633252 - 23633294
Alignment:
Q  146 ttgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||||||||| || |||||| |||||||||||    
T  23633252 ttgacaacttttattttctcttttttcattggtccaaaacaat 23633294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 3821547 - 3821506
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    |||||| ||||||||  |||||||||||||||||||||||||    
T  3821547 tgacaatttttatttgttctcttctcattgatccaaaacaat 3821506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 7693458 - 7693417
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    |||||| |||||||||||||||||| |||| |||||||||||    
T  7693458 tgacaatttttattttctctcttcttattggtccaaaacaat 7693417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 186
Target Start/End: Original strand, 10637 - 10702
Alignment:
Q  121 agtagtgatatattgacaaccatttttgacaacttttattttctctcttctcattgatccaaaaca 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  10637 agtagtgatatattgacaaccatttttgacaacttttattttctctcttctcattggtcaaaaaca 10702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 3484927 - 3484859
Alignment:
Q  120 gagtagtgatatattgacaaccatttttgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||  |||||||||| |||||||||| ||||||||||||||||||| |||||||||||    
T  3484927 gagtagtgatatatgtacaaccatttgtgacaactttcattttctctcttctcattggtccaaaacaat 3484859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 622386 - 622428
Alignment:
Q  146 ttgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  622386 ttgacaacttttattttctctcttctcattggtccaaaacaat 622428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 11233959 - 11234000
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  11233959 tgacaacttttatttactctcttctcattgatccaaaacaat 11234000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 24748769 - 24748705
Alignment:
Q  120 gagtagtgatatattgacaaccatttttgacaacttttattttctctcttctcattgatccaaaa 184  Q
    ||||||||||||||  ||||| ||||  ||||||||| ||||||||||||||||||| |||||||    
T  24748769 gagtagtgatatatgtacaactatttgagacaactttcattttctctcttctcattggtccaaaa 24748705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 44334728 - 44334770
Alignment:
Q  146 ttgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||| ||||||||||||||||||||||| |||||||||||    
T  44334728 ttgacaatttttattttctctcttctcattggtccaaaacaat 44334770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 35425600 - 35425641
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    |||||||||| |||| ||||||||||||||||||||||||||    
T  35425600 tgacaactttcatttgctctcttctcattgatccaaaacaat 35425641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 44334689 - 44334726
Alignment:
Q  119 tgagtagtgatatattgacaaccatttttgacaacttt 156  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  44334689 tgagtagtgatatattgacaaccatttgtgacaacttt 44334726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 39932287 - 39932245
Alignment:
Q  146 ttgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||||||||| ||||||||| | |||||||||    
T  39932287 ttgacaacttttattttctcttttctcattggttcaaaacaat 39932245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 28300574 - 28300615
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||||||||||| |||||| || ||||||||    
T  28300574 tgacaacttttattttctctcttttcattggtcaaaaacaat 28300615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 39932326 - 39932289
Alignment:
Q  119 tgagtagtgatatattgacaaccatttttgacaacttt 156  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  39932326 tgagtagtgatatactgacaatcatttttgacaacttt 39932289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 38692227 - 38692295
Alignment:
Q  120 gagtagtgatatattgacaaccatttttgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    |||||||||||| |  |||||||||| ||||||||||  |||||| |||||| |||| || ||||||||    
T  38692227 gagtagtgatatttgtacaaccatttatgacaactttctttttctatcttcttattggtcaaaaacaat 38692295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 34261913 - 34261981
Alignment:
Q  120 gagtagtgatatattgacaaccatttttgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||  |||||||||| ||||||||| ||||||||||||| | |||| |||||||||||    
T  34261913 gagtagtgatatatgtacaaccatttgtgacaacttgtattttctctctttttattggtccaaaacaat 34261981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 25994272 - 25994205
Alignment:
Q  119 tgagtagtgatatattgacaaccatttttgacaacttttattttctctcttctcattgatccaaaaca 186  Q
    |||||||||||||||  ||||| |||| |||||||||| |||||||||||||| |||| |||||||||    
T  25994272 tgagtagtgatatatgtacaactatttgtgacaactttcattttctctcttcttattggtccaaaaca 25994205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 546312 - 546354
Alignment:
Q  146 ttgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  546312 ttgacaacttttattttctctcttctcattggtccaaaacaat 546354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 6666164 - 6666123
Alignment:
Q  146 ttgacaacttttattttctctcttctcattgatccaaaacaa 187  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  6666164 ttgacaacttttattttctctcttctcattggtccaaaacaa 6666123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 7497918 - 7497960
Alignment:
Q  146 ttgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||||||||||||||||||| | |||||||||    
T  7497918 ttgacaacttttattttctctcttctcattggttcaaaacaat 7497960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 44411037 - 44411106
Alignment:
Q  119 tgagtagtgatatattgacaaccatttttgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    |||||||||||||||  |||| |||||  ||||||||||||||| |||||| | |||| |||||||||||    
T  44411037 tgagtagtgatatatgtacaatcatttgggacaacttttattttatctctttttattggtccaaaacaat 44411106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 7497880 - 7497916
Alignment:
Q  120 gagtagtgatatattgacaaccatttttgacaacttt 156  Q
    |||||||||||||||||||||||||| ||||||||||    
T  7497880 gagtagtgatatattgacaaccatttgtgacaacttt 7497916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 7687896 - 7687854
Alignment:
Q  146 ttgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    |||| |||||||||||||||||||||||||| || ||||||||    
T  7687896 ttgataacttttattttctctcttctcattggtctaaaacaat 7687854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 36795 - 36837
Alignment:
Q  146 ttgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  36795 ttgacaacttttattttctctcttctcattggtccaaaacaat 36837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 36757 - 36793
Alignment:
Q  120 gagtagtgatatattgacaaccatttttgacaacttt 156  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  36757 gagtattgatatattgacaatcatttttgacaacttt 36793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 41304909 - 41304951
Alignment:
Q  146 ttgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  41304909 ttgacaacttttattttctctcttctcattggtccaaaacaat 41304951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 29910101 - 29910137
Alignment:
Q  120 gagtagtgatatattgacaaccatttttgacaacttt 156  Q
    |||||||||||||||||||||||||||||||||||||    
T  29910101 gagtagtgatatattgacaaccatttttgacaacttt 29910137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 29910139 - 29910181
Alignment:
Q  146 ttgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||||||||||||||||||| | |||||||||    
T  29910139 ttgacaacttttattttctctcttctcattggttcaaaacaat 29910181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 5642318 - 5642359
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||||||||||||| |||| |||||||||||    
T  5642318 tgacaacttttattttctctcttcttattggtccaaaacaat 5642359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 5644259 - 5644300
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||||||||||||| |||| |||||||||||    
T  5644259 tgacaacttttattttctctcttcttattggtccaaaacaat 5644300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 27055279 - 27055327
Alignment:
Q  136 acaaccatttttgacaacttttattttctctcttctcattgatccaaaa 184  Q
    |||| ||||| ||||||||||||||||||||||| | ||||||||||||    
T  27055279 acaatcatttgtgacaacttttattttctctcttttgattgatccaaaa 27055327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 5782933 - 5782890
Alignment:
Q  145 tttgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    |||||||||||| |||||||||||| ||||||||| ||||||||    
T  5782933 tttgacaactttcattttctctcttttcattgatcaaaaacaat 5782890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 324008 - 324049
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||| ||||||||| |||| |||||||||||    
T  324008 tgacaacttttatttactctcttcttattggtccaaaacaat 324049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 20683698 - 20683633
Alignment:
Q  119 tgagtagtgatatattgacaaccatttttgacaacttttattttctctcttctcattgatccaaaa 184  Q
    |||||| |||||||   ||||| |||| |||||||||||||||||||  ||||||||| |||||||    
T  20683698 tgagtaatgatatacgtacaactatttatgacaacttttattttctcctttctcattggtccaaaa 20683633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 41005903 - 41005870
Alignment:
Q  151 aacttttattttctctcttctcattgatccaaaa 184  Q
    |||||||||||||||||||||||||| |||||||    
T  41005903 aacttttattttctctcttctcattggtccaaaa 41005870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 45081210 - 45081169
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||| ||||||||  ||||||||||||||||    
T  45081210 tgacaacttttatttactctcttcctattgatccaaaacaat 45081169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 42825258 - 42825216
Alignment:
Q  146 ttgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  42825258 ttgacaacttttattttctctcttctcattggtccaaaacaat 42825216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 33743261 - 33743302
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  33743261 tgacaacttttatttgctctcttctcattgatccaaaacaat 33743302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 34952333 - 34952374
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||||||||||||| |||| |||||||||||    
T  34952333 tgacaacttttattttctctcttcttattggtccaaaacaat 34952374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 39840631 - 39840672
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||||| |||||||||||| |||||||||||    
T  39840631 tgacaacttttattttccctcttctcattggtccaaaacaat 39840672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 6865713 - 6865756
Alignment:
Q  145 tttgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||||||||||||| |||||| || ||||||||    
T  6865713 tttgacaacttttattttctctcttttcattggtcaaaaacaat 6865756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 9277543 - 9277580
Alignment:
Q  151 aacttttattttctctcttctcattgatccaaaacaat 188  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  9277543 aacttttattttctctcttctcattggtccataacaat 9277580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 42807451 - 42807410
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||||||||||| | |||| |||||||||||    
T  42807451 tgacaacttttattttctctctttttattggtccaaaacaat 42807410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 20125533 - 20125493
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaa 187  Q
    |||||||||| ||||||||||||||||||| || |||||||    
T  20125533 tgacaactttcattttctctcttctcattggtcaaaaacaa 20125493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 32682046 - 32682110
Alignment:
Q  120 gagtagtgatatattgacaaccatttttgacaacttttattttctctcttctcattgatccaaaa 184  Q
    ||||||||||||||  | ||| |||| |||||||||||||||||| | || |||||| |||||||    
T  32682046 gagtagtgatatatgtataactatttgtgacaacttttattttctttgttttcattggtccaaaa 32682110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 33422146 - 33422188
Alignment:
Q  146 ttgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  33422146 ttgacaacttttattttctctcttctcattggtccaaaacaat 33422188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 44112598 - 44112556
Alignment:
Q  146 ttgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  44112598 ttgacaacttttattttctctcttctcattggtccaaaacaat 44112556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 24775157 - 24775121
Alignment:
Q  120 gagtagtgatatattgacaaccatttttgacaacttt 156  Q
    |||||||||||||||||||||||||||||||||||||    
T  24775157 gagtagtgatatattgacaaccatttttgacaacttt 24775121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 44641830 - 44641868
Alignment:
Q  146 ttgacaacttttattttctctcttctcattgatccaaaa 184  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  44641830 ttgacaacttttattttctctcttctcattggtccaaaa 44641868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 47279829 - 47279772
Alignment:
Q  120 gagtagtgatatattgacaaccattt-ttgacaacttttattttctctcttctcattg 176  Q
    |||||||||||||| ||||| ||||| ||||||||||||||||||||| || ||||||    
T  47279829 gagtagtgatatatcgacaatcatttattgacaacttttattttctcttttttcattg 47279772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 51250219 - 51250260
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||||||||||||| ||||||| ||||||||    
T  51250219 tgacaacttttattttctctcttcttattgatctaaaacaat 51250260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 11011888 - 11011952
Alignment:
Q  124 agtgatatattgacaaccatttttgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||  |||||||||| ||| |||||| ||||| ||||||||||||  |||||||||||    
T  11011888 agtgatatatgtacaaccatttgtgataactttcattttttctcttctcatttgtccaaaacaat 11011952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 39220377 - 39220341
Alignment:
Q  120 gagtagtgatatattgacaaccatttttgacaacttt 156  Q
    |||||||||||||||||||||||||| ||||||||||    
T  39220377 gagtagtgatatattgacaaccatttgtgacaacttt 39220341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 176
Target Start/End: Original strand, 49589899 - 49589929
Alignment:
Q  146 ttgacaacttttattttctctcttctcattg 176  Q
    |||||||||||||||||||||||||||||||    
T  49589899 ttgacaacttttattttctctcttctcattg 49589929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 4511705 - 4511746
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    |||||||||| ||||| ||||||||||||| |||||||||||    
T  4511705 tgacaactttcattttttctcttctcattggtccaaaacaat 4511746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 30530327 - 30530368
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    |||||||||| |||||||||||||| |||| |||||||||||    
T  30530327 tgacaactttcattttctctcttcttattggtccaaaacaat 30530368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 31184424 - 31184383
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    |||||||||| ||||||||| |||| ||||||||||||||||    
T  31184424 tgacaactttcattttctcttttcttattgatccaaaacaat 31184383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 40139256 - 40139215
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    |||||||||| ||||||||||||||||||  |||||||||||    
T  40139256 tgacaactttcattttctctcttctcatttgtccaaaacaat 40139215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 44950349 - 44950390
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||| ||||||||  ||||||||||||||||    
T  44950349 tgacaacttttatttactctcttcctattgatccaaaacaat 44950390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 26214108 - 26214160
Alignment:
Q  136 acaaccatttttgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    |||||||||  |||||||||||||||| || ||| |||||| |||||||||||    
T  26214108 acaaccattgatgacaacttttattttatcacttatcattggtccaaaacaat 26214160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 44817861 - 44817792
Alignment:
Q  119 tgagtagtgatatattgacaaccatttttgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    |||||||||||||||  |||| |||||  ||||||||| |||||| |||||||||||| |||||||||||    
T  44817861 tgagtagtgatatatacacaatcatttgagacaactttcattttcgctcttctcattggtccaaaacaat 44817792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 5724181 - 5724140
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||||||||||| |||||| |||||||||||    
T  5724181 tgacaacttttattttctctcttttcattggtccaaaacaat 5724140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 30391289 - 30391248
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||| |||||||||||||| |||||||||||    
T  30391289 tgacaacttttatttactctcttctcattggtccaaaacaat 30391248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 31364787 - 31364837
Alignment:
Q  120 gagtagtgatatattgacaaccatttttgacaa-cttttattttctctctt 169  Q
    ||||||||||||||||||||| |||| ||||||  ||||||||||||||||    
T  31364787 gagtagtgatatattgacaactatttgtgacaattttttattttctctctt 31364837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 27070597 - 27070638
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    |||||||| | ||||||||||||||||||| |||||||||||    
T  27070597 tgacaactctcattttctctcttctcattggtccaaaacaat 27070638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 27207716 - 27207675
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    |||||||| | ||||||||||||||||||| |||||||||||    
T  27207716 tgacaactctcattttctctcttctcattggtccaaaacaat 27207675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 47644852 - 47644811
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    |||||||||| |||| |||||||||||||| |||||||||||    
T  47644852 tgacaactttcatttgctctcttctcattggtccaaaacaat 47644811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 49089092 - 49089129
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaa 184  Q
    |||||||||| ||||||||||||||||||| |||||||    
T  49089092 tgacaactttcattttctctcttctcattggtccaaaa 49089129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 31147374 - 31147333
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||||||||||||| |||| |||||||||||    
T  31147374 tgacaacttttattttctctcttcttattggtccaaaacaat 31147333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 46912699 - 46912768
Alignment:
Q  119 tgagtagtgatatattgacaaccatttttgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    |||||||||||||||  || | |||||  ||||||||| |||||||||||||| |||| |||||||||||    
T  46912699 tgagtagtgatatatgtacgatcatttgggacaactttcattttctctcttcttattggtccaaaacaat 46912768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 1688358 - 1688397
Alignment:
Q  149 acaacttttattttctctcttctcattgatccaaaacaat 188  Q
    |||||||||||||||||||||||||||| |||||| ||||    
T  1688358 acaacttttattttctctcttctcattggtccaaaccaat 1688397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 51397765 - 51397827
Alignment:
Q  126 tgatatattgacaaccatttttgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||  ||||| || | |||||||||| |||||||||||| ||||||| ||||||||||    
T  51397765 tgatatatgtacaactatatgtgacaactttcattttctctcttttcattgacccaaaacaat 51397827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 4514193 - 4514234
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    |||||| ||| ||||||||||||||||||| |||||||||||    
T  4514193 tgacaattttcattttctctcttctcattggtccaaaacaat 4514234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 10096670 - 10096711
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    |||||||||| |||| |||||||||||||| |||||||||||    
T  10096670 tgacaactttcatttgctctcttctcattggtccaaaacaat 10096711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 1688317 - 1688349
Alignment:
Q  120 gagtagtgatatattgacaaccatttttgacaa 152  Q
    |||||||||||||||||||||||||| ||||||    
T  1688317 gagtagtgatatattgacaaccatttgtgacaa 1688349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 19315076 - 19315008
Alignment:
Q  120 gagtagtgatatattgacaaccatttttgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    |||||||||||| |  |||||||||| ||||||||||  |||||| |||||| |||| || ||||||||    
T  19315076 gagtagtgatatttgtacaaccatttgtgacaactttctttttctttcttcttattggtcaaaaacaat 19315008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 16573 - 16537
Alignment:
Q  120 gagtagtgatatattgacaaccatttttgacaacttt 156  Q
    |||||||||||||||||||||||||| ||||||||||    
T  16573 gagtagtgatatattgacaaccatttatgacaacttt 16537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 16535 - 16493
Alignment:
Q  146 ttgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    ||||||||||||||||||||| ||||||||| |||| ||||||    
T  16535 ttgacaacttttattttctctattctcattggtccataacaat 16493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Original strand, 21504 - 21542
Alignment:
Q  149 acaacttttattttctctcttctcattgatccaaaacaa 187  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  21504 acaactttcattttctctcttctcattggtccaaaacaa 21542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 29738 - 29779
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    |||||||||| |||||||||||| |||||| |||||||||||    
T  29738 tgacaactttcattttctctcttttcattggtccaaaacaat 29779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 60610 - 60569
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    |||||||||| |||||||||||| |||||| |||||||||||    
T  60610 tgacaactttcattttctctcttttcattggtccaaaacaat 60569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 156049 - 156008
Alignment:
Q  147 tgacaacttttattttctctcttctcattgatccaaaacaat 188  Q
    |||||||| | ||||||||||||||||||| |||||||||||    
T  156049 tgacaactctcattttctctcttctcattggtccaaaacaat 156008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University