View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8767_low_3 (Length: 362)

Name: NF8767_low_3
Description: NF8767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8767_low_3
NF8767_low_3
[»] chr4 (23 HSPs)
chr4 (22-319)||(6612131-6612428)
chr4 (319-362)||(9283953-9283996)
chr4 (319-362)||(25273925-25273968)
chr4 (319-362)||(43154018-43154061)
chr4 (319-362)||(47417704-47417747)
chr4 (319-362)||(49410265-49410308)
chr4 (319-362)||(50766516-50766559)
chr4 (319-362)||(53616654-53616697)
chr4 (319-362)||(868204-868247)
chr4 (319-362)||(4643900-4643943)
chr4 (319-362)||(9528881-9528924)
chr4 (319-362)||(20569297-20569340)
chr4 (319-362)||(29965677-29965720)
chr4 (319-362)||(10359551-10359594)
chr4 (319-362)||(10389758-10389801)
chr4 (319-362)||(31381676-31381719)
chr4 (319-362)||(35261233-35261276)
chr4 (319-362)||(38706714-38706757)
chr4 (319-362)||(43444435-43444478)
chr4 (319-362)||(44947454-44947497)
chr4 (319-362)||(51318027-51318070)
chr4 (319-360)||(1531950-1531991)
chr4 (319-359)||(1931723-1931763)
[»] chr2 (17 HSPs)
chr2 (200-362)||(84184-84346)
chr2 (87-203)||(84368-84484)
chr2 (319-362)||(27249155-27249198)
chr2 (319-362)||(36234042-36234085)
chr2 (319-362)||(3269115-3269158)
chr2 (319-362)||(3269674-3269717)
chr2 (319-362)||(3270233-3270276)
chr2 (319-362)||(7015715-7015758)
chr2 (319-362)||(8805900-8805943)
chr2 (319-362)||(9986346-9986389)
chr2 (319-362)||(30420712-30420755)
chr2 (319-359)||(4228167-4228207)
chr2 (319-362)||(21570411-21570454)
chr2 (319-362)||(27949460-27949503)
chr2 (319-362)||(31580593-31580636)
chr2 (319-362)||(34599021-34599064)
chr2 (319-361)||(8971632-8971674)
[»] chr5 (16 HSPs)
chr5 (200-319)||(22790458-22790577)
chr5 (319-362)||(2057842-2057885)
chr5 (319-362)||(34881750-34881793)
chr5 (320-362)||(27266863-27266905)
chr5 (319-362)||(3271406-3271449)
chr5 (319-362)||(26578284-26578327)
chr5 (326-362)||(27751965-27752001)
chr5 (319-358)||(10649676-10649715)
chr5 (319-362)||(16981322-16981365)
chr5 (319-362)||(18677469-18677512)
chr5 (319-362)||(30371758-30371801)
chr5 (319-362)||(41184444-41184487)
chr5 (328-362)||(19259816-19259850)
chr5 (87-136)||(22790596-22790646)
chr5 (320-362)||(35475341-35475383)
chr5 (320-360)||(781422-781462)
[»] chr3 (14 HSPs)
chr3 (319-362)||(14464537-14464580)
chr3 (319-362)||(12116125-12116168)
chr3 (319-362)||(32607496-32607539)
chr3 (319-362)||(4178592-4178635)
chr3 (319-362)||(25631530-25631573)
chr3 (319-362)||(25849837-25849880)
chr3 (319-362)||(35499202-35499245)
chr3 (319-362)||(42719544-42719587)
chr3 (319-362)||(46934669-46934712)
chr3 (319-362)||(21488118-21488161)
chr3 (319-362)||(25162463-25162506)
chr3 (319-362)||(36906149-36906192)
chr3 (319-362)||(51202258-51202301)
chr3 (332-362)||(39917402-39917432)
[»] chr8 (13 HSPs)
chr8 (318-362)||(9498603-9498647)
chr8 (319-362)||(2655907-2655950)
chr8 (319-362)||(9619361-9619404)
chr8 (319-362)||(23851498-23851541)
chr8 (319-362)||(4809001-4809044)
chr8 (319-362)||(11196926-11196969)
chr8 (319-358)||(14906931-14906970)
chr8 (319-362)||(32724485-32724528)
chr8 (319-362)||(34611841-34611884)
chr8 (319-362)||(42448031-42448074)
chr8 (319-362)||(44099938-44099981)
chr8 (326-360)||(43890130-43890164)
chr8 (320-360)||(30026817-30026857)
[»] chr7 (18 HSPs)
chr7 (319-362)||(2843245-2843288)
chr7 (319-362)||(46822045-46822088)
chr7 (319-362)||(32684698-32684741)
chr7 (326-360)||(6558914-6558948)
chr7 (320-360)||(48207932-48207972)
chr7 (319-362)||(1448834-1448877)
chr7 (319-362)||(20116612-20116655)
chr7 (319-362)||(23786605-23786648)
chr7 (319-362)||(26492395-26492438)
chr7 (319-362)||(34773741-34773784)
chr7 (319-362)||(35496179-35496222)
chr7 (319-362)||(42311310-42311353)
chr7 (319-362)||(42408392-42408435)
chr7 (319-362)||(46339084-46339127)
chr7 (320-362)||(42067065-42067107)
chr7 (317-362)||(21266419-21266464)
chr7 (326-362)||(35667236-35667272)
chr7 (320-360)||(45199038-45199078)
[»] chr1 (16 HSPs)
chr1 (319-362)||(5701293-5701336)
chr1 (319-362)||(19715899-19715942)
chr1 (319-362)||(31836841-31836884)
chr1 (319-362)||(40881016-40881059)
chr1 (319-362)||(50148404-50148447)
chr1 (319-362)||(50272144-50272187)
chr1 (319-362)||(7997823-7997866)
chr1 (319-362)||(28035173-28035216)
chr1 (319-362)||(30879109-30879152)
chr1 (319-362)||(35584622-35584665)
chr1 (319-362)||(40646704-40646747)
chr1 (319-362)||(5324562-5324605)
chr1 (319-362)||(9687208-9687251)
chr1 (319-362)||(20266336-20266379)
chr1 (319-362)||(33291422-33291465)
chr1 (319-362)||(45426070-45426113)
[»] scaffold0426 (1 HSPs)
scaffold0426 (319-362)||(6335-6378)
[»] chr6 (8 HSPs)
chr6 (319-362)||(4984571-4984614)
chr6 (319-362)||(8496997-8497040)
chr6 (319-362)||(25064266-25064309)
chr6 (319-362)||(33110641-33110684)
chr6 (319-358)||(4088490-4088529)
chr6 (319-362)||(8028122-8028165)
chr6 (319-358)||(8196415-8196454)
chr6 (319-362)||(12652974-12653017)
[»] scaffold0022 (1 HSPs)
scaffold0022 (319-362)||(83442-83485)


Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 22 - 319
Target Start/End: Original strand, 6612131 - 6612428
Alignment:
Q  22 catccgtaaactattaataaaggcaatacaaataagttcaccagttctcgtgaataattcctatcggttttctctcctagggtttttcattgatcatcat 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6612131 catccgtaaactattaataaaggcaatacaaataagttcaccagttctcgtgaataattcctatcggttttctctcctagggtttttcattgatcatcat 6612230  T
Q  122 tggaattcctttgtgagtgtgttgttgtcgatcgttctggatcatccagacctggtcgtttaggcttgggcaccgtttgtgtgtttgcatatttcttttg 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6612231 tggaattcctttgtgagtgtgttgttgtcgatcgttctggatcatccagacctggtcgtttaggcttgggcaccgtttgtgtgtttgcatatgtcttttg 6612330  T
Q  222 gcattctgattcaaactcctctttgctaaattggaatccttgcaataacaaagtccttttcccattccatgttatgtgatcacatgggctttcaaatt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6612331 gcattctgattcaaactcctctttgctaaattggaatccttgcaataacaaagtccttttcccattcgatgttatgtgatcacatgggctttcaaatt 6612428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 9283953 - 9283996
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  9283953 ttgtttgatttcccgtcttcgtgcggtgttcatttgattcatat 9283996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 25273925 - 25273968
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  25273925 ttgtttgatttcccgtcttcgtgcggtgttcatttgattcatat 25273968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 43154061 - 43154018
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  43154061 ttgtttgatttcccgtcttcgtgcggtgttcatttgattcatat 43154018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 47417704 - 47417747
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  47417704 ttgtttgatttcccgtcttcgtgcggtgttcatttgattcatat 47417747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 49410265 - 49410308
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  49410265 ttgtttgatttcccgtcttcgtgcggtgttcatttgattcatat 49410308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 50766559 - 50766516
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  50766559 ttgtttgatttcccgtcttcgtgcggtgttcatttgattcatat 50766516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 53616697 - 53616654
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  53616697 ttgtttgatttcccgtcttcgtgcggtgttcatttgattcatat 53616654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 868204 - 868247
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||||||||||| |||||||||||||||||||||||    
T  868204 ttgtttgatttcccgtcttcttgcggtgttcatttgattcatat 868247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 4643900 - 4643943
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  4643900 ttgtttgatttcccgtctttgtgcggtgttcatttgattcatat 4643943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 9528924 - 9528881
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  9528924 ttgtttgatttcccgtcttcgtgcgatgttcatttgattcatat 9528881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 20569297 - 20569340
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||| ||||||||||||||||||||||||||||||||    
T  20569297 ttgtttgattttccgtcttcgtgcggtgttcatttgattcatat 20569340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 29965677 - 29965720
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  29965677 ttgtttgatttcccgtctttgtgcggtgttcatttgattcatat 29965720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 10359594 - 10359551
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||||||||||| || ||||||||||||||||||||    
T  10359594 ttgtttgatttcccgtcttcttgtggtgttcatttgattcatat 10359551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 10389801 - 10389758
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||| |||||||| |||||||||||||||||||||||    
T  10389801 ttgtttgattttccgtcttcttgcggtgttcatttgattcatat 10389758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 31381719 - 31381676
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||| |||||||||||||||||| |||||||||||||    
T  31381719 ttgtttgattttccgtcttcgtgcggtgttaatttgattcatat 31381676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 35261233 - 35261276
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||| |||||||| |||||||||||||||||||||||    
T  35261233 ttgtttgattttccgtcttcttgcggtgttcatttgattcatat 35261276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 38706757 - 38706714
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||||||||||||||||||||| |||||||| ||||    
T  38706757 ttgtttcatttcccgtcttcgtgcggtgttaatttgatttatat 38706714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 43444435 - 43444478
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||| |||||| |||||||||||||||||||||||||    
T  43444435 ttgtttgattttccgtctacgtgcggtgttcatttgattcatat 43444478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 44947454 - 44947497
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||| ||||||||||||||| ||||    
T  44947454 ttgtttgatttcccgtcttcgtgtggtgttcatttgattaatat 44947497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 51318027 - 51318070
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||||||||||| ||||||||| |||||||||||||    
T  51318027 ttgtttgatttcccgtcttcttgcggtgttaatttgattcatat 51318070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 360
Target Start/End: Original strand, 1531950 - 1531991
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcat 360  Q
    |||||| |||||| |||||||||||||||| |||||||||||    
T  1531950 ttgtttgatttcctgtcttcgtgcggtgtttatttgattcat 1531991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 359
Target Start/End: Complemental strand, 1931763 - 1931723
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattca 359  Q
    |||||| ||||||||||||  ||||||||||||||||||||    
T  1931763 ttgtttcatttcccgtcttgttgcggtgttcatttgattca 1931723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 5e-75; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 200 - 362
Target Start/End: Complemental strand, 84346 - 84184
Alignment:
Q  200 gtgtgtttgcatatttcttttggcattctgattcaaactcctctttgctaaattggaatccttgcaataacaaagtccttttcccattccatgttatgtg 299  Q
    |||||||||||| | | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  84346 gtgtgtttgcatctgtattttggcactctgattcaaactcctctttgctaaattggaatccttgcaataacaaagtccttttcccattccatgttatgtg 84247  T
Q  300 atcacatgggctttcaaatttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  84246 atcacatgggctttcaaatttgtttgatttcccgtcttcgtgcggtgttcatttgattcatat 84184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 87 - 203
Target Start/End: Complemental strand, 84484 - 84368
Alignment:
Q  87 ggttttctctcctagggtttttcattgatcatcattggaattcctttgtgagtgtgttgttgtcgatcgttctggatcatccagacctggtcgtttaggc 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  84484 ggttttctctcctagggtttttcattgatcatcattggaattcctttgtgagtgtgttgttgtcgatcgttctagatcatccagacctgatcgtttaggc 84385  T
Q  187 ttgggcaccgtttgtgt 203  Q
    |||||||||||||||||    
T  84384 ttgggcaccgtttgtgt 84368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 27249198 - 27249155
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  27249198 ttgtttgatttcccgtcttcgtgcggtgttcatttgattcatat 27249155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 36234042 - 36234085
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  36234042 ttgtttgatttcccgtcttcgtgcggtgttcatttgattcatat 36234085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 3269158 - 3269115
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||| ||||||||||||||||||||||||||||||||    
T  3269158 ttgtttgattttccgtcttcgtgcggtgttcatttgattcatat 3269115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 3269717 - 3269674
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||| ||||||||||||||||||||||||||||||||    
T  3269717 ttgtttgattttccgtcttcgtgcggtgttcatttgattcatat 3269674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 3270276 - 3270233
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||| ||||||||||||||||||||||||||||||||    
T  3270276 ttgtttgattttccgtcttcgtgcggtgttcatttgattcatat 3270233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 7015758 - 7015715
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||| ||||||||||||||||||||||||||||||||    
T  7015758 ttgtttgattttccgtcttcgtgcggtgttcatttgattcatat 7015715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 8805900 - 8805943
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||| ||||||||||||||||||||    
T  8805900 ttgtttgatttcccgtcttcgtgtggtgttcatttgattcatat 8805943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 9986389 - 9986346
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||| ||||||||||||||||||||||||||||||||    
T  9986389 ttgtttgattttccgtcttcgtgcggtgttcatttgattcatat 9986346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 30420712 - 30420755
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||| ||||||||||||||||||||||||||||||||    
T  30420712 ttgtttgattttccgtcttcgtgcggtgttcatttgattcatat 30420755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 359
Target Start/End: Original strand, 4228167 - 4228207
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattca 359  Q
    |||||| |||| |||||||||||||||||||||||||||||    
T  4228167 ttgtttgattttccgtcttcgtgcggtgttcatttgattca 4228207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 21570454 - 21570411
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    ||||||| ||||||||||||  ||||||||||||||||||||||    
T  21570454 ttgtttagtttcccgtcttctcgcggtgttcatttgattcatat 21570411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 27949460 - 27949503
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||||||||||| |||| ||||||||||||||||||    
T  27949460 ttgtttgatttcccgtcttcttgcgatgttcatttgattcatat 27949503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 31580636 - 31580593
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||||||| |||||||||||||||||||||| ||||    
T  31580636 ttgttttatttcccgtattcgtgcggtgttcatttgatttatat 31580593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 34599021 - 34599064
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||| || |||||||||||||||||||||||||||||    
T  34599021 ttgtttgattttccatcttcgtgcggtgttcatttgattcatat 34599064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 361
Target Start/End: Complemental strand, 8971674 - 8971632
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcata 361  Q
    |||||| ||||||| |||||||||| |||||||||||||||||    
T  8971674 ttgtttgatttcccatcttcgtgcgatgttcatttgattcata 8971632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 200 - 319
Target Start/End: Complemental strand, 22790577 - 22790458
Alignment:
Q  200 gtgtgtttgcatatttcttttggcattctgattcaaactcctctttgctaaattggaatccttgcaataacaaagtccttttcccattccatgttatgtg 299  Q
    |||||||||||||| ||  |||||| || |||||||| ||||| ||| ||||||||||||| ||||||||||||||| |||| ||||| |||||||||||    
T  22790577 gtgtgtttgcatatgtcaattggcactccgattcaaattcctccttgttaaattggaatccatgcaataacaaagtcatttttccattgcatgttatgtg 22790478  T
Q  300 atcacatgggctttcaaatt 319  Q
    |||| |||||||||||||||    
T  22790477 atcatatgggctttcaaatt 22790458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 2057885 - 2057842
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  2057885 ttgtttgatttcccgtcttcgtgcggtgttcatttgattcatat 2057842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 34881750 - 34881793
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  34881750 ttgtttgatttcccgtcttcgtgcggtgttcatttgattcatat 34881793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 320 - 362
Target Start/End: Complemental strand, 27266905 - 27266863
Alignment:
Q  320 tgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  27266905 tgtttgatttcccgtcttcgtgcggtgttcatttgattcatat 27266863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 3271449 - 3271406
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||| ||||||||||||||||||||||||||||||||    
T  3271449 ttgtttgattttccgtcttcgtgcggtgttcatttgattcatat 3271406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 26578284 - 26578327
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||||||||||||||| |||||||||||||||||||    
T  26578284 ttgtttgatttcccgtcttcgtgcagtgttcatttgattcatat 26578327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 362
Target Start/End: Original strand, 27751965 - 27752001
Alignment:
Q  326 atttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    ||||||||||||| |||||||||||||||||||||||    
T  27751965 atttcccgtcttcttgcggtgttcatttgattcatat 27752001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 358
Target Start/End: Original strand, 10649676 - 10649715
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattc 358  Q
    |||||| |||| ||||||||||||||||||||||||||||    
T  10649676 ttgtttgatttaccgtcttcgtgcggtgttcatttgattc 10649715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 16981322 - 16981365
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    ||||||||||| |||||||| |||||||||| ||||||||||||    
T  16981322 ttgtttaattttccgtcttcttgcggtgttcctttgattcatat 16981365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 18677512 - 18677469
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||| |||||||||| |||||||||||||||||||||    
T  18677512 ttgtttgattttccgtcttcgtacggtgttcatttgattcatat 18677469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 30371758 - 30371801
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||    
T  30371758 ttgtttgatttcccatcttcgtgcggtgttcatttaattcatat 30371801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 41184487 - 41184444
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||| ||||||| ||||||||||||    
T  41184487 ttgtttgatttcccgtcttcgtgtggtgttcgtttgattcatat 41184444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 328 - 362
Target Start/End: Complemental strand, 19259850 - 19259816
Alignment:
Q  328 ttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    ||||||||||||||||||||| |||||||||||||    
T  19259850 ttcccgtcttcgtgcggtgtttatttgattcatat 19259816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 22790646 - 22790596
Alignment:
Q  87 ggttttctctcctagggtttttc-attgatcatcattggaattcctttgtg 136  Q
    ||||||||||||||||||| ||| | |||||||||||| ||||||||||||    
T  22790646 ggttttctctcctagggttcttccactgatcatcattgaaattcctttgtg 22790596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 362
Target Start/End: Complemental strand, 35475383 - 35475341
Alignment:
Q  320 tgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    ||||| ||||| ||||||| |||||||||||||||||||||||    
T  35475383 tgtttgatttctcgtcttcttgcggtgttcatttgattcatat 35475341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 781422 - 781462
Alignment:
Q  320 tgtttaatttcccgtcttcgtgcggtgttcatttgattcat 360  Q
    ||||| ||||||||||||| |||||||||||| ||||||||    
T  781422 tgtttgatttcccgtcttcttgcggtgttcatctgattcat 781462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 14464537 - 14464580
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  14464537 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 14464580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 12116125 - 12116168
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  12116125 ttgtttgatttcccgtcttcgtgcggtgttcatttgattcatat 12116168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 32607496 - 32607539
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  32607496 ttgtttgatttcccgtcttcgtgcggtgttcatttgattcatat 32607539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 4178592 - 4178635
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||||||||||||||||||| ||||    
T  4178592 ttgtttcatttcccgtcttcgtgcggtgttcatttgatttatat 4178635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 25631573 - 25631530
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||||||||||||||||||| ||||    
T  25631573 ttgtttcatttcccgtcttcgtgcggtgttcatttgatttatat 25631530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 25849837 - 25849880
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||||||||||| |||||||||||||||||||||||    
T  25849837 ttgttttatttcccgtcttcttgcggtgttcatttgattcatat 25849880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 35499245 - 35499202
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  35499245 ttgtttgatttcccgtctttgtgcggtgttcatttgattcatat 35499202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 42719544 - 42719587
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||| ||||||||||||||||||||||||||||||||    
T  42719544 ttgtttgattttccgtcttcgtgcggtgttcatttgattcatat 42719587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 46934669 - 46934712
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||||||||||| |||||||||||||||||||||||    
T  46934669 ttgtttgatttcccgtcttcttgcggtgttcatttgattcatat 46934712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 21488118 - 21488161
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||||||||||| ||||||||| |||||||||||||    
T  21488118 ttgtttgatttcccgtcttcttgcggtgtttatttgattcatat 21488161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 25162463 - 25162506
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||||| ||||||||||||||||||||| |||||||    
T  25162463 ttgtttgatttcccatcttcgtgcggtgttcatttgtttcatat 25162506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 36906149 - 36906192
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||||||||||||||  |||||||||||||||||||    
T  36906149 ttgtttgatttcccgtcttcgtgtagtgttcatttgattcatat 36906192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 51202301 - 51202258
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||||| || ||||||||||||||||||||||||||    
T  51202301 ttgtttgatttcccatcgtcgtgcggtgttcatttgattcatat 51202258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 362
Target Start/End: Complemental strand, 39917432 - 39917402
Alignment:
Q  332 cgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||||||||||||||||||||||||||||    
T  39917432 cgtcttcgtgcggtgttcatttgattcatat 39917402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 9498647 - 9498603
Alignment:
Q  318 tttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  9498647 tttgtttgatttcccgtcttcgtgcggtgttcatttgattcatat 9498603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 2655907 - 2655950
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  2655907 ttgtttgatttcccgtcttcgtgcggtgttcatttgattcatat 2655950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 9619404 - 9619361
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  9619404 ttgtttgatttcccgtcttcgtgcggtgttcatttgattcatat 9619361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 23851541 - 23851498
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  23851541 ttgtttgatttcccgtcttcgtgcggtgttcatttgattcatat 23851498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 4809001 - 4809044
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||| ||||||||||||||||||||||||||||||||    
T  4809001 ttgtttgattttccgtcttcgtgcggtgttcatttgattcatat 4809044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 11196926 - 11196969
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||| |||||||| |||||||||||||||||||||||    
T  11196926 ttgtttgattttccgtcttcttgcggtgttcatttgattcatat 11196969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 358
Target Start/End: Complemental strand, 14906970 - 14906931
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattc 358  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  14906970 ttgtttgatttcccgtcttcgtgcgatgttcatttgattc 14906931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 32724528 - 32724485
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||| |||||||||| |||||||||||||||||||    
T  32724528 ttgtttgatttccagtcttcgtgcagtgttcatttgattcatat 32724485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 34611841 - 34611884
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||| ||||| ||||||||||||||||||||||||||    
T  34611841 ttgtttgattttccgtcgtcgtgcggtgttcatttgattcatat 34611884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 42448074 - 42448031
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||  |||||||||||||||||||||||||||||||    
T  42448074 ttgtttgatttttcgtcttcgtgcggtgttcatttgattcatat 42448031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 44099981 - 44099938
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||||||||||  |||||||||||||||||||||||    
T  44099981 ttgtttgatttcccgtctttttgcggtgttcatttgattcatat 44099938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 360
Target Start/End: Complemental strand, 43890164 - 43890130
Alignment:
Q  326 atttcccgtcttcgtgcggtgttcatttgattcat 360  Q
    ||||||||||||||| |||||||||||||||||||    
T  43890164 atttcccgtcttcgtacggtgttcatttgattcat 43890130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 30026857 - 30026817
Alignment:
Q  320 tgtttaatttcccgtcttcgtgcggtgttcatttgattcat 360  Q
    ||||| |||||||||||| |||||||||| |||||||||||    
T  30026857 tgtttgatttcccgtcttagtgcggtgtttatttgattcat 30026817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 2843288 - 2843245
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  2843288 ttgtttgatttcccgtcttcgtgcggtgttcatttgattcatat 2843245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 46822045 - 46822088
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  46822045 ttgtttgatttcccgtcttcgtgcggtgttcatttgattcatat 46822088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 32684698 - 32684741
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  32684698 ttgtttgatttcccgtctttgtgcggtgttcatttgattcatat 32684741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 326 - 360
Target Start/End: Original strand, 6558914 - 6558948
Alignment:
Q  326 atttcccgtcttcgtgcggtgttcatttgattcat 360  Q
    |||||||||||||||||||||||||||||||||||    
T  6558914 atttcccgtcttcgtgcggtgttcatttgattcat 6558948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 48207932 - 48207972
Alignment:
Q  320 tgtttaatttcccgtcttcgtgcggtgttcatttgattcat 360  Q
    ||||| ||||||||||||| |||||||||||||||||||||    
T  48207932 tgtttgatttcccgtcttcttgcggtgttcatttgattcat 48207972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 1448877 - 1448834
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||| ||||||| |||||||||||||||||||||||    
T  1448877 ttgtttgatttctcgtcttcttgcggtgttcatttgattcatat 1448834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 20116612 - 20116655
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||| |||||||| |||||||||||||||||||||||    
T  20116612 ttgtttgatttaccgtcttcttgcggtgttcatttgattcatat 20116655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 23786605 - 23786648
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||| ||||||| |||||||||||||||||||||||    
T  23786605 ttgtttgatttctcgtcttcttgcggtgttcatttgattcatat 23786648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 26492395 - 26492438
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||| ||| ||||||||||||||||||    
T  26492395 ttgtttgatttcccgtcttcgcgcgatgttcatttgattcatat 26492438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 34773741 - 34773784
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||| |||||| |||||||||||||||||||||||    
T  34773741 ttgtttgatttcctgtcttcttgcggtgttcatttgattcatat 34773784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 35496222 - 35496179
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||| ||||||||||||||||||||| ||||    
T  35496222 ttgtttcatttcccgtcctcgtgcggtgttcatttgatttatat 35496179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 42311310 - 42311353
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||| ||||||||||||| ||||||||||||||||||    
T  42311310 ttgtttgattttccgtcttcgtgcgatgttcatttgattcatat 42311353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 42408392 - 42408435
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||| ||||||||||||||| ||||||||||||||||    
T  42408392 ttgtttgattttccgtcttcgtgcggtattcatttgattcatat 42408435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 46339084 - 46339127
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||| |||||||||| |||||||||||||||||||||    
T  46339084 ttgtttgattttccgtcttcgtacggtgttcatttgattcatat 46339127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 362
Target Start/End: Complemental strand, 42067107 - 42067065
Alignment:
Q  320 tgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    ||||| ||||| ||||||| |||||||||||||||||||||||    
T  42067107 tgtttgatttctcgtcttcttgcggtgttcatttgattcatat 42067065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 362
Target Start/End: Original strand, 21266419 - 21266464
Alignment:
Q  317 atttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||| |||||||| |||||||| |||||||||||| ||||||||||    
T  21266419 atttttttaattttccgtcttcttgcggtgttcatctgattcatat 21266464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 362
Target Start/End: Complemental strand, 35667272 - 35667236
Alignment:
Q  326 atttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||| |||||||| |||||||||||||||||||||||    
T  35667272 attttccgtcttcttgcggtgttcatttgattcatat 35667236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 45199078 - 45199038
Alignment:
Q  320 tgtttaatttcccgtcttcgtgcggtgttcatttgattcat 360  Q
    ||||| ||||||||||||| |||||||||||| ||||||||    
T  45199078 tgtttgatttcccgtcttcttgcggtgttcatctgattcat 45199038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 5701293 - 5701336
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  5701293 ttgtttgatttcccgtcttcgtgcggtgttcatttgattcatat 5701336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 19715942 - 19715899
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  19715942 ttgtttgatttcccgtcttcgtgcggtgttcatttgattcatat 19715899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 31836841 - 31836884
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  31836841 ttgtttgatttcccgtcttcgtgcggtgttcatttgattcatat 31836884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 40881059 - 40881016
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  40881059 ttgtttgatttcccgtcttcgtgcggtgttcatttgattcatat 40881016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 50148404 - 50148447
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  50148404 ttgtttgatttcccgtcttcgtgcggtgttcatttgattcatat 50148447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 50272187 - 50272144
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  50272187 ttgtttgatttcccgtcttcgtgcggtgttcatttgattcatat 50272144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 7997823 - 7997866
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||||||||||||||| |||||||||||||||||||    
T  7997823 ttgtttgatttcccgtcttcgtgcagtgttcatttgattcatat 7997866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 28035173 - 28035216
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||||||||||||| |||||||||||||||||||||    
T  28035173 ttgtttgatttcccgtcttcgtacggtgttcatttgattcatat 28035216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 30879109 - 30879152
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||| ||||||||||||||||||||||||||||||||    
T  30879109 ttgtttgattttccgtcttcgtgcggtgttcatttgattcatat 30879152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 35584665 - 35584622
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||| ||||||||||||||||||||||||||||||||    
T  35584665 ttgtttgattttccgtcttcgtgcggtgttcatttgattcatat 35584622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 40646704 - 40646747
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||||||||||||||||||||| |||||||||||||    
T  40646704 ttgtttgatttcccgtcttcgtgcggtgtttatttgattcatat 40646747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 5324605 - 5324562
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||||||||||  |||||||||||||||||||||||    
T  5324605 ttgtttgatttcccgtctttttgcggtgttcatttgattcatat 5324562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 9687251 - 9687208
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||||| ||||| |||||||||||||||||||||||    
T  9687251 ttgtttgatttcccatcttcttgcggtgttcatttgattcatat 9687208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 20266336 - 20266379
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||||||||  ||||||||||||||    
T  20266336 ttgtttgatttcccgtcttcgtgcggtggacatttgattcatat 20266379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 33291465 - 33291422
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||| ||||| ||||||||||||||||||||||||||    
T  33291465 ttgtttgattttccgtcgtcgtgcggtgttcatttgattcatat 33291422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 45426113 - 45426070
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||||| || ||||||||||||||||||||||||||    
T  45426113 ttgtttgatttcccatcatcgtgcggtgttcatttgattcatat 45426070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 6335 - 6378
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||||||||||| |||||||||||||||||||||||    
T  6335 ttgtttgatttcccgtcttcttgcggtgttcatttgattcatat 6378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 4984614 - 4984571
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||||||||| ||||||||||||||||||||    
T  4984614 ttgtttgatttcccgtcttcgtgaggtgttcatttgattcatat 4984571  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 8496997 - 8497040
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||| |||||||||||||||||||||||||||||||    
T  8496997 ttgtttgatttctcgtcttcgtgcggtgttcatttgattcatat 8497040  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 25064266 - 25064309
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||||||| |||||||||||||||||||||||||||    
T  25064266 ttgtttgatttcccgttttcgtgcggtgttcatttgattcatat 25064309  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 33110641 - 33110684
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||| |||||||||||||||||||||||||||||||    
T  33110641 ttgtttgatttctcgtcttcgtgcggtgttcatttgattcatat 33110684  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 358
Target Start/End: Original strand, 4088490 - 4088529
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattc 358  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  4088490 ttgtttgatttcccgtcttcgtgcgatgttcatttgattc 4088529  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 8028165 - 8028122
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||||||||| |||| |||||||||||||||||||||    
T  8028165 ttgtttgatttcccgtcatcgtacggtgttcatttgattcatat 8028122  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 358
Target Start/End: Complemental strand, 8196454 - 8196415
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattc 358  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  8196454 ttgtttgatttcccgtctttgtgcggtgttcatttgattc 8196415  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 12652974 - 12653017
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| |||| || |||||||||||||||||||||||||||||    
T  12652974 ttgtttgattttccatcttcgtgcggtgttcatttgattcatat 12653017  T

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Target: scaffold0022 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 83485 - 83442
Alignment:
Q  319 ttgtttaatttcccgtcttcgtgcggtgttcatttgattcatat 362  Q
    |||||| ||||| |||||||||||||| ||||||||||||||||    
T  83485 ttgtttgatttctcgtcttcgtgcggtattcatttgattcatat 83442  T

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