View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8767_low_4 (Length: 350)
Name: NF8767_low_4
Description: NF8767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8767_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 337
Target Start/End: Original strand, 28905665 - 28905985
Alignment:
| Q |
17 |
gaaaagggagtcggctgagggaaacgagggttgttaaaaggaagggaaatattctcttcattaacaacaccattttctctccgatgaaaatttcggtgac |
116 |
Q |
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| T |
28905665 |
gaaaagggagtcggctgagggaaacgggggttgttaaaaggaagggaaatattctcttcattaacaacaccattttctctccgatgaaaatttcggtgac |
28905764 |
T |
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| Q |
117 |
agttacacgcggcgcatttgaaaaattcgatggtcccttcaattccagcgggtaaaaactcgccacaaccatcaagagcgtagcctccaatgctggaagc |
216 |
Q |
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| T |
28905765 |
agttacacgcggcgcatttgaaaaattcgatggtcccttcaattccagcgggtaaaaactcgccacaaccatcaagagcgtagcctccaatgctggaagc |
28905864 |
T |
|
| Q |
217 |
atgattctttctacactctttgaacttttcttcgtagctattgctttgagaattcattagggtttcttcatcatgatgattcaaggttttagttgtttca |
316 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28905865 |
atgattctttctacactctttgaacttttcttcgaagctattgctttgagaattcattagggtttcttcatcatgatgattcaaggttttagttgtttca |
28905964 |
T |
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| Q |
317 |
acgtaacttgttggttcagta |
337 |
Q |
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||||||||||||||||||||| |
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| T |
28905965 |
acgtaacttgttggttcagta |
28905985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 15978529 - 15978475
Alignment:
| Q |
160 |
tccagcgggtaaaaactcgccacaaccatcaagagcgtagcctccaatgctggaa |
214 |
Q |
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| T |
15978529 |
tccagcaggtaaaaactcacgacaaccatcaagagagtagcctccaatactggaa |
15978475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 337
Target Start/End: Original strand, 32142771 - 32143088
Alignment:
| Q |
20 |
aagggagtcggctgagggaaacgagggttgttaaaaggaagggaaatattctcttcattaacaacaccattttctctccgatgaaaatttcggtgacagt |
119 |
Q |
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|||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32142771 |
aagggagttggctgaggaaaacgggggttgttaaaaggaagggaaatattctcttcattaacaacaccattttctctccgatgaaaatttcggtgacagt |
32142870 |
T |
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| Q |
120 |
tacacgcggcgcatttgaaaaattcgatggtcccttcaattccagcgggtaaaaactcgccacaaccatcaagagcgtagcctccaatgctggaagcatg |
219 |
Q |
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||||||| || ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32142871 |
tacacgcagcacatgtgaaaaattcgatggttccttcaattccagcgggtaaaaactcgccacaaccatcaagagcgtagcctccaatgctggaagcgtg |
32142970 |
T |
|
| Q |
220 |
attctttctacactctttgaacttttcttcgtagctattgctttgagaattcattagggtttcttcatcatgatgattcaaggttttagttgtttcaacg |
319 |
Q |
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||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||| |||||| |||| ||||| |||||||||||||| |
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| T |
32142971 |
attctttctacactctttgaagtttctttcaaagctattgctttgagaattcattagggtttcttcaacatgatcattcgaggttgtagttgtttcaacg |
32143070 |
T |
|
| Q |
320 |
taacttgttggttcagta |
337 |
Q |
| |
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|||||||||||||||||| |
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| T |
32143071 |
taacttgttggttcagta |
32143088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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