View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8767_low_5 (Length: 305)
Name: NF8767_low_5
Description: NF8767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8767_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 11 - 288
Target Start/End: Original strand, 14592184 - 14592461
Alignment:
| Q |
11 |
tagataatacttcataactcttcattctctacttctctaatgtcatgggcataggttgatagcttctcaacttaatcctaataataaccaaattgaagaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
14592184 |
tagataatacttcataactcttcattctctacttctctaatggcatgggcataggttgatagcttctcaacttaatcctaataagaaccaaattgatgaa |
14592283 |
T |
|
| Q |
111 |
atctcaactcaaaagaacaaaaattaaccagtataacaattacagcaagtgtttgttgaaacaattacataaactaacttatagtttactattctgttct |
210 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14592284 |
atctcaactcaaaagaacaaaaattaactagtataacaattacagcaattgtttgttgaaacaattacataaactaacttatagtttactattatgttct |
14592383 |
T |
|
| Q |
211 |
taatgttaatcatacagttgcttttattaattaatttttaacttgattgtactgtcttaagaatatatacaatcaggt |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14592384 |
taatgttaatcatacagttgcttttattaattaatttttaacttgattgtactgtcttaagaatatatacaatcaggt |
14592461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 288
Target Start/End: Complemental strand, 13309385 - 13309108
Alignment:
| Q |
11 |
tagataatacttcataactcttcattctctacttctctaatgtcatgggcataggttgatagcttctcaacttaatcctaataataaccaaattgaagaa |
110 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
13309385 |
tagataataattcataactcttcattctctacttctctaatggcatgggcataggttgatagcttctcaacttaatcctaataataatcaaattgatgaa |
13309286 |
T |
|
| Q |
111 |
atctcaactcaaaagaacaaaaattaaccagtataacaattacagcaagtgtttgttgaaacaattacataaactaacttatagtttactattctgttct |
210 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| |||||| |
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| T |
13309285 |
atctcaactcaaaagaacaaaaattaactagtataacaattacaacaagtgtttgttgatacaattacataaactaacttatagttcactattttgttct |
13309186 |
T |
|
| Q |
211 |
taatgttaatcatacagttgcttttattaattaatttttaacttgattgtactgtcttaagaatatatacaatcaggt |
288 |
Q |
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||||||| ||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13309185 |
taatgttgatcctacagttgcttttattaattaatgtttaacttgattgtattgtcttaagaatatatacaatcaggt |
13309108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 8e-55; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 140 - 288
Target Start/End: Complemental strand, 13787313 - 13787170
Alignment:
| Q |
140 |
agtataacaattacagcaagtgtttgttgaaacaattacataaactaacttatagtttactattctgttcttaatgttaatcatacagttgcttttatta |
239 |
Q |
| |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||| |
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| T |
13787313 |
agtaaaacaattacaacaagtgtttgttgaaacaattacataaactaacttatagtttactattatgttcttaatgttgatcatacag-----tttatta |
13787219 |
T |
|
| Q |
240 |
attaatttttaacttgattgtactgtcttaagaatatatacaatcaggt |
288 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13787218 |
attaatttttaacttgattgtattgtcttaagaatatatacaatcaggt |
13787170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 49282071 - 49282122
Alignment:
| Q |
11 |
tagataatacttcataactcttcattctctacttctctaatgtcatgggcat |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49282071 |
tagataatacttcataactcttcattctctacttctctaatggcatgggcat |
49282122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 45909704 - 45909635
Alignment:
| Q |
157 |
aagtgtttgttgaaacaattacataaactaacttatagtttactattctgttcttaatgttaatcataca |
226 |
Q |
| |
|
||||||||||||||||||||||| ||| | || |||||||| ||||| | |||||| || | |||||||| |
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| T |
45909704 |
aagtgtttgttgaaacaattacacaaattgacctatagttttctattttattcttattgctgatcataca |
45909635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 149
Target Start/End: Original strand, 21280536 - 21280674
Alignment:
| Q |
11 |
tagataatacttcataactcttcattctctacttctctaatgtcatgggcataggttgatagcttctcaacttaatcctaataataaccaaattgaagaa |
110 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||||| |||| ||||||| |||||| | ||||| ||| |
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| T |
21280536 |
tagataatacttcataattcttcattctctacatctctaatagcatggacataggttgatagcttaacaacaatatcctaacaataactagattgatgaa |
21280635 |
T |
|
| Q |
111 |
atctcaactcaaaagaacaaaaattaaccagtataacaa |
149 |
Q |
| |
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||||||| | || ||||||||| ||| |||||||||| |
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| T |
21280636 |
atctcaatttaagtaaacaaaaatcaactagtataacaa |
21280674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 277
Target Start/End: Original strand, 21280887 - 21281008
Alignment:
| Q |
160 |
tgtttgttgaaacaattacataaactaacttatagtttactattctgttcttaatgttaatcatacagttgcttttattaatt----aatttttaacttg |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| || ||||| ||| | |||||||| | |||||||||| |
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| T |
21280887 |
tgtttgttgaaacaattacataaactaacttattgttttctattatgttcttaatgttgattatacaattgtatatattaatttttaattttttaacttt |
21280986 |
T |
|
| Q |
256 |
attgtactgtcttaagaatata |
277 |
Q |
| |
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|||||| |||||||| |||||| |
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| T |
21280987 |
attgtattgtcttaaaaatata |
21281008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 13935775 - 13935724
Alignment:
| Q |
11 |
tagataatacttcataactcttcattctctacttctctaatgtcatgggcat |
62 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
13935775 |
tagataatacttcataactctgcattctctacttctctaatggcatgggcat |
13935724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 4855403 - 4855474
Alignment:
| Q |
29 |
tcttcattctctacttctctaatgtcatgggcataggttgatagcttctcaacttaatcctaataataacca |
100 |
Q |
| |
|
||||||| |||||| ||||||||| || ||||||||| ||||| |||| |||||| |||||||||||||||| |
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|
| T |
4855403 |
tcttcatcctctacgtctctaatggcacgggcatagggtgataacttcacaacttcatcctaataataacca |
4855474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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