View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8767_low_9 (Length: 228)
Name: NF8767_low_9
Description: NF8767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8767_low_9 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 40987097 - 40986871
Alignment:
| Q |
1 |
tatacctaaattgagtttagagaaaagaccaataaaaataataataattgatcaatcagatatcatatgtctcataacccccattgacatagaaataaat |
100 |
Q |
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| T |
40987097 |
tatacctaaattgagtttagagaaaagaccaataaaaataataataattgaccaatcagatatcatatgtctcataacccc-attgacatagaaataaat |
40986999 |
T |
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| Q |
101 |
ctcaataacttccatattaatgaaaagtagacactccagacagattttatgattttcattcaagtcatgtttactgaatttgttcttaatacgaattagt |
200 |
Q |
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| T |
40986998 |
ctcaataacttccatattaatgaaaagtagacactccagacagattttatgattttcattcaagtcatgtttactgaatttcttcttaatacgaattagt |
40986899 |
T |
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| Q |
201 |
tttgtatcatttgaactgaattagactt |
228 |
Q |
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| T |
40986898 |
tttgtatcatttgaactgaattagactt |
40986871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 46 - 181
Target Start/End: Complemental strand, 40992788 - 40992655
Alignment:
| Q |
46 |
aattgatcaatcagatatcatatgtctcataacccccattgacatagaaataaatctcaataacttccatattaatgaaaagtagacactccagacagat |
145 |
Q |
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| T |
40992788 |
aattcatcaatcagatatctcatgtctcataacccc--ttgacaaagacatcaatctcaatgacttctatattaatgacaactagacactccagacaaat |
40992691 |
T |
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| Q |
146 |
tttatgattttcattcaagtcatgtttactgaattt |
181 |
Q |
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| T |
40992690 |
tttatgattttcattcaagtcatgtttactgaattt |
40992655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 40992855 - 40992811
Alignment:
| Q |
4 |
acctaaattgagtttagagaaaagaccaa-taaaaataataataa |
47 |
Q |
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| T |
40992855 |
acctaaattgagtttagagaaaagaccaattaaaaataataataa |
40992811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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